From f102cb1282cd7e1ea1446b6c8c11f75443312476 Mon Sep 17 00:00:00 2001
From: Henry Webel <heweb@dtu.dk>
Date: Thu, 20 Nov 2025 14:59:17 +0100
Subject: [PATCH] :construction: add more ruff checks

---
 pyproject.toml | 13 +++++++++++++
 1 file changed, 13 insertions(+)

diff --git a/pyproject.toml b/pyproject.toml
index 94773b5..2609fac 100644
--- a/pyproject.toml
+++ b/pyproject.toml
@@ -43,6 +43,19 @@ classifiers = [
   "Operating System :: OS Independent"
 ]
 
+[tool.ruff]
+# https://docs.astral.sh/ruff/rules/#flake8-bandit-s
+
+[tool.ruff.lint]
+# https://docs.astral.sh/ruff/tutorial/#rule-selection
+# 1. Enable flake8-bugbear (`B`) rules
+# 2. Enable pycodestyle (`E`) errors and (`W`) warnings
+# 3. Pyflakes (`F`) errors
+extend-select = ["E", "W", "F", "B"]
+# Ignore line length errors:
+# ignore = ["E501"]
+
+
 [project.urls]
 Homepage = "https://github.com/Multiomics-Analytics-Group/InstaNexus"
 Issues = "https://github.com/Multiomics-Analytics-Group/InstaNexus/issues"