diff --git a/3tools.md b/3tools.md index 0f1470e33ce..a1425509e5b 100644 --- a/3tools.md +++ b/3tools.md @@ -37,17 +37,33 @@ permalink: /tools/
Analytics Core (Acore) Library -

Acore, short for analytics core, is an open-source Python library to preprocess and analyse multi-omics data. It includes functionality related to preprocessing, e.g. for data normalization, missing value imputation or feature selection, and functionality for statistical data analysis, e.g. an analysis of covariance.

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Acore, short for analytics core, is an open-source Python library to preprocess and analyse multi-omics data. It includes functionality related to preprocessing, e.g. for data normalization, missing value imputation or feature selection, and functionality for statistical data analysis, e.g. an analysis of covariance.

Acore is designed to be user-friendly and flexible, allowing users to easily apply different analysis strategies, testing effects of choosing specific steps.

Check out current recipes and the core libary documentation at analytics-core.readthedocs.io

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+ Visualization Core (VueCore) Library +
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VueCore is a Python package for creating interactive and static visualizations of multi-omics data. It provides a user-friendly and high-level abstraction over complex plotting libraries, allowing researchers to generate a wide range of figures with minimal code.

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This tool implements defaults for quick plotting, while also exposing the underlying plot objects for further customization. The package is designed with a modular and engine-agnostic architecture, with initial support for Plotly and a foundation for adding more plotting libraries in the future.

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The documentation is available at vuecore.readthedocs.io, where you can find installation instructions, the API reference, and example notebooks demonstrating its functionality.

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VueGen
- VueGen + VueGen

VueGen is a tool that automates the creation of reports from bioinformatics outputs, allowing researchers with minimal coding experience to communicate their results effectively. With VueGen, users can produce reports by simply specifying a directory containing output files, such as plots, tables, networks, Markdown text, HTML components, and API calls, along with the report format. Supported formats include documents (PDF, HTML, DOCX, ODT), presentations (PPTX, Reveal.js), Jupyter notebooks and Streamlit web applications.