🎨 Style(vuegen_case_study_earth_microbiome.ipynb): Update EMP example notebook with boolean for colab

Author: sayalaruano

docs/vuegen_case_study_earth_microbiome.ipynb

@@ -61,7 +61,7 @@
    "source": [
     "### 0.1. Installing libraries and creating global variables for platform and working directory\n",
     "\n",
-    "To run this notebook locally, you should create a virtual environment with the required libraries and set the `platform` variable to `local_notebook`. If you are running this notebook on Google Colab, set the `platform` variable to `colab`."
+    "To run this notebook locally, you should create a virtual environment with the required libraries. If you are running this notebook on Google Colab, everything should be set."
    ]
   },
   {
@@ -90,7 +90,8 @@
    "metadata": {},
    "outputs": [],
    "source": [
-    "platform = 'local_notebook' #@param ['colab', 'local_notebook'] {allow-input: true}"
+    "import os\n",
+    "IN_COLAB = \"COLAB_GPU\" in os.environ"
    ]
   },
   {
@@ -100,7 +101,7 @@
    "outputs": [],
    "source": [
     "# Optional library to launch a streamlit app from colab\n",
-    "if platform == 'colab':\n",
+    "if IN_COLAB:\n",
     "    !npm install localtunnel"
    ]
   },
@@ -148,7 +149,7 @@
     "from vuegen import report_generator\n",
     "from vuegen.utils import get_logger, load_yaml_config\n",
     "\n",
-    "if platform == 'colab':\n",
+    "if IN_COLAB:\n",
     "    import urllib"
    ]
   },
@@ -1388,10 +1389,10 @@
    "metadata": {},
    "outputs": [],
    "source": [
-    "# Launch the Streamlit report depneding on the platform\n",
-    "#if platform == \"local_notebook\":\n",
+    "# # Launch the Streamlit report depneding on the platform\n",
+    "# if not IN_COLAB:\n",
     "#    !streamlit run streamlit_report/sections/report_manager.py\n",
-    "#elif platform == \"colab\": # https://discuss.streamlit.io/t/how-to-launch-streamlit-app-from-google-colab-notebook/42399\n",
+    "# else: # https://discuss.streamlit.io/t/how-to-launch-streamlit-app-from-google-colab-notebook/42399\n",
     "#    print(\"Password/Enpoint IP for localtunnel is:\",urllib.request.urlopen('https://ipv4.icanhazip.com').read().decode('utf8').strip(\"\\n\"))\n",
     "#    !streamlit run streamlit_report/sections/report_manager.py --server.address=localhost &>/content/logs.txt &\n",
     "#    !npx localtunnel --port 8501"
@@ -1567,10 +1568,10 @@
    "metadata": {},
    "outputs": [],
    "source": [
-    "# Launch the Streamlit report depneding on the platform\n",
-    "#if platform == \"local_notebook\":\n",
+    "# # Launch the Streamlit report depneding on the platform\n",
+    "# if not IN_COLAB:\n",
     "#    !streamlit run streamlit_report/sections/report_manager.py\n",
-    "#elif platform == \"colab\":\n",
+    "# else: # https://discuss.streamlit.io/t/how-to-launch-streamlit-app-from-google-colab-notebook/42399\n",
     "#    print(\"Password/Enpoint IP for localtunnel is:\",urllib.request.urlopen('https://ipv4.icanhazip.com').read().decode('utf8').strip(\"\\n\"))\n",
     "#    !streamlit run streamlit_report/sections/report_manager.py --server.address=localhost &>/content/logs.txt &\n",
     "#    !npx localtunnel --port 8501"