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🐛 update logo path (from previous commit)
- this should also bug in `split_readme.py` where the link was not updated, leading to a missing landing page!
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.github/workflows/cdci.yml

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- name: Build executable
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run: |
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cd gui
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pyinstaller -n vuegen_gui --onefile --windowed --collect-all pyvis --collect-all streamlit --collect-all st_aggrid --collect-all customtkinter --collect-all quarto_cli --collect-all plotly --collect-all _plotly_utils --collect-all traitlets --collect-all referencing --collect-all rpds --collect-all tenacity --collect-all pandas --collect-all numpy --collect-all matplotlib --collect-all openpyxl --collect-all xlrd --collect-all nbformat --collect-all nbclient --collect-all altair --collect-all itables --collect-all kaleido --collect-all pyarrow --collect-all dataframe_image --collect-all narwhals --collect-all PIL --collect-all vl_convert --collect-all typing-extensions --add-data ../docs/example_data/Basic_example_vuegen_demo_notebook:example_data/Basic_example_vuegen_demo_notebook --add-data ../docs/images/vuegen_logo.png:. app.py
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pyinstaller -n vuegen_gui --onefile --windowed --collect-all pyvis --collect-all streamlit --collect-all st_aggrid --collect-all customtkinter --collect-all quarto_cli --collect-all plotly --collect-all _plotly_utils --collect-all traitlets --collect-all referencing --collect-all rpds --collect-all tenacity --collect-all pandas --collect-all numpy --collect-all matplotlib --collect-all openpyxl --collect-all xlrd --collect-all nbformat --collect-all nbclient --collect-all altair --collect-all itables --collect-all kaleido --collect-all pyarrow --collect-all dataframe_image --collect-all narwhals --collect-all PIL --collect-all vl_convert --collect-all typing-extensions --add-data ../docs/example_data/Basic_example_vuegen_demo_notebook:example_data/Basic_example_vuegen_demo_notebook --add-data ../docs/images/logo/vuegen_logo.png:. app.py
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# --windowed only for mac, see:
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# https://pyinstaller.org/en/stable/usage.html#building-macos-app-bundles
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# 'Under macOS, PyInstaller always builds a UNIX executable in dist.'

docs/example_config_files/Basic_example_vuegen_demo_notebook_config.yaml

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report:
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title: Basic Example Vuegen Demo Notebook
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description: A general description of the report.
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graphical_abstract: https://raw.githubusercontent.com/Multiomics-Analytics-Group/vuegen/main/docs/images/vuegen_logo.png
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logo: https://raw.githubusercontent.com/Multiomics-Analytics-Group/vuegen/main/docs/images/vuegen_logo.png
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graphical_abstract: https://raw.githubusercontent.com/Multiomics-Analytics-Group/vuegen/main/docs/images/logo/vuegen_logo.png
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logo: https://raw.githubusercontent.com/Multiomics-Analytics-Group/vuegen/main/docs/images/logo/vuegen_logo.png
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sections:
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- title: Plots
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description: This section contains example plots.

docs/example_data/Basic_example_vuegen_demo_notebook/5_Markdown/1_All_markdown/README.md

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<!-- <div align="center">
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<img width="300px" src="images/vuegen_logo.svg">
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<img width="300px" src="images/logo/vuegen_logo.svg">
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</div> -->
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![VueGen Logo](https://raw.githubusercontent.com/Multiomics-Analytics-Group/vuegen/main/docs/images/vuegen_logo.png)
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![VueGen Logo](https://raw.githubusercontent.com/Multiomics-Analytics-Group/vuegen/main/docs/images/logo/vuegen_logo.png)
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<p align="center">
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VueGen is a Python library that automates the creation of scientific reports.

docs/split_readme.py

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# Mapping section titles to their corresponding filenames
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SECTION_MAPPING = {
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"![VueGen Logo](https://raw.githubusercontent.com/Multiomics-Analytics-Group/vuegen/main/docs/images/vuegen_logo.svg)": "home_page.md",
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"![VueGen Logo](https://raw.githubusercontent.com/Multiomics-Analytics-Group/vuegen/HEAD/docs/images/logo/vuegen_logo.svg)": "home_page.md",
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"About the project": "about.md",
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"Installation": "installation.md",
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"Execution": "execution.md",

docs/vuegen_basic_case_study.ipynb

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},
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"outputs": [],
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"source": [
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"vuegen_logo_path = \"https://raw.githubusercontent.com/Multiomics-Analytics-Group/vuegen/main/docs/images/vuegen_logo.svg\"\n",
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"vuegen_logo_path = \"https://raw.githubusercontent.com/Multiomics-Analytics-Group/vuegen/main/docs/images/logo/vuegen_logo.png\"\n",
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"\n",
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"# Load the YAML file\n",
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"print(\n",
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],
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"metadata": {
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"kernelspec": {
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"display_name": "Python 3 (ipykernel)",
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"display_name": "vuegen_py312",
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"language": "python",
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"name": "python3"
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},
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"name": "python",
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"nbconvert_exporter": "python",
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"pygments_lexer": "ipython3",
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"version": "3.12.6"
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"version": "3.12.9"
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}
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},
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"nbformat": 4,

docs/vuegen_basic_case_study_configfile.md

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report:
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title: Basic Example Vuegen Demo Notebook
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description: A general description of the report.
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graphical_abstract: https://raw.githubusercontent.com/Multiomics-Analytics-Group/vuegen/main/docs/images/vuegen_logo.png
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logo: https://raw.githubusercontent.com/Multiomics-Analytics-Group/vuegen/main/docs/images/vuegen_logo.png
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graphical_abstract: https://raw.githubusercontent.com/Multiomics-Analytics-Group/vuegen/main/docs/images/logo/vuegen_logo.png
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logo: https://raw.githubusercontent.com/Multiomics-Analytics-Group/vuegen/main/docs/images/logo/vuegen_logo.png
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sections:
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- title: Plots
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description: This section contains example plots.

gui/Makefile

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--collect-all vl_convert \
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--collect-all typing-extensions \
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--add-data ../docs/example_data/Basic_example_vuegen_demo_notebook:example_data/Basic_example_vuegen_demo_notebook \
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--add-data ../docs/images/vuegen_logo.png:. \
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--add-data ../docs/images/logo/vuegen_logo.png:. \
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app.py
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tests/report_examples/Basic_example_vuegen_demo_notebook_cfg/streamlit_report/sections/Home/Homepage.py

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unsafe_allow_html=True)
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st.image('https://raw.githubusercontent.com/Multiomics-Analytics-Group/vuegen/main/docs/images/vuegen_logo.png', use_column_width=True)
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st.image('https://raw.githubusercontent.com/Multiomics-Analytics-Group/vuegen/main/docs/images/logo/vuegen_logo.png', use_column_width=True)
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footer = '''
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<style type="text/css">
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.footer {

tests/report_examples/Basic_example_vuegen_demo_notebook_cfg/streamlit_report/sections/report_manager.py

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st.set_page_config(layout="wide",
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page_title="Basic Example Vuegen Demo Notebook",
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page_icon="https://raw.githubusercontent.com/Multiomics-Analytics-Group/vuegen/main/docs/images/vuegen_logo.png"
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page_icon="https://raw.githubusercontent.com/Multiomics-Analytics-Group/vuegen/main/docs/images/logo/vuegen_logo.png"
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)
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st.logo("https://raw.githubusercontent.com/Multiomics-Analytics-Group/vuegen/main/docs/images/vuegen_logo.png")
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st.logo("https://raw.githubusercontent.com/Multiomics-Analytics-Group/vuegen/main/docs/images/logo/vuegen_logo.png")
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st.markdown(

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