🐛 update logo path (from previous commit)

- this should also bug in `split_readme.py` where the link was not updated, leading to a missing landing page!

Author: enryH

.github/workflows/cdci.yml

@@ -217,7 +217,7 @@ jobs:
       - name: Build executable
         run: |
           cd gui
-          pyinstaller -n vuegen_gui --onefile --windowed --collect-all pyvis --collect-all streamlit --collect-all st_aggrid --collect-all customtkinter --collect-all quarto_cli --collect-all plotly --collect-all _plotly_utils --collect-all traitlets --collect-all referencing --collect-all rpds --collect-all tenacity --collect-all pandas --collect-all numpy --collect-all matplotlib --collect-all openpyxl --collect-all xlrd --collect-all nbformat --collect-all nbclient --collect-all altair --collect-all itables --collect-all kaleido --collect-all pyarrow --collect-all dataframe_image --collect-all narwhals --collect-all PIL --collect-all vl_convert --collect-all typing-extensions --add-data ../docs/example_data/Basic_example_vuegen_demo_notebook:example_data/Basic_example_vuegen_demo_notebook --add-data ../docs/images/vuegen_logo.png:. app.py
+          pyinstaller -n vuegen_gui --onefile --windowed --collect-all pyvis --collect-all streamlit --collect-all st_aggrid --collect-all customtkinter --collect-all quarto_cli --collect-all plotly --collect-all _plotly_utils --collect-all traitlets --collect-all referencing --collect-all rpds --collect-all tenacity --collect-all pandas --collect-all numpy --collect-all matplotlib --collect-all openpyxl --collect-all xlrd --collect-all nbformat --collect-all nbclient --collect-all altair --collect-all itables --collect-all kaleido --collect-all pyarrow --collect-all dataframe_image --collect-all narwhals --collect-all PIL --collect-all vl_convert --collect-all typing-extensions --add-data ../docs/example_data/Basic_example_vuegen_demo_notebook:example_data/Basic_example_vuegen_demo_notebook --add-data ../docs/images/logo/vuegen_logo.png:. app.py
         # --windowed only for mac, see:
         # https://pyinstaller.org/en/stable/usage.html#building-macos-app-bundles
         # 'Under macOS, PyInstaller always builds a UNIX executable in dist.'

docs/example_config_files/Basic_example_vuegen_demo_notebook_config.yaml

@@ -1,8 +1,8 @@
 report:
   title: Basic Example Vuegen Demo Notebook
   description: A general description of the report.
-  graphical_abstract: https://raw.githubusercontent.com/Multiomics-Analytics-Group/vuegen/main/docs/images/vuegen_logo.png
-  logo: https://raw.githubusercontent.com/Multiomics-Analytics-Group/vuegen/main/docs/images/vuegen_logo.png
+  graphical_abstract: https://raw.githubusercontent.com/Multiomics-Analytics-Group/vuegen/main/docs/images/logo/vuegen_logo.png
+  logo: https://raw.githubusercontent.com/Multiomics-Analytics-Group/vuegen/main/docs/images/logo/vuegen_logo.png
 sections:
 - title: Plots
   description: This section contains example plots.

docs/example_data/Basic_example_vuegen_demo_notebook/5_Markdown/1_All_markdown/README.md

@@ -1,8 +1,8 @@
 <!-- <div align="center">
-  <img width="300px" src="images/vuegen_logo.svg">
+  <img width="300px" src="images/logo/vuegen_logo.svg">
 </div> -->
 
-![VueGen Logo](https://raw.githubusercontent.com/Multiomics-Analytics-Group/vuegen/main/docs/images/vuegen_logo.png)
+![VueGen Logo](https://raw.githubusercontent.com/Multiomics-Analytics-Group/vuegen/main/docs/images/logo/vuegen_logo.png)
 
 <p align="center">
    VueGen is a Python library that automates the creation of scientific reports.

docs/split_readme.py

@@ -3,7 +3,7 @@
 
 # Mapping section titles to their corresponding filenames
 SECTION_MAPPING = {
-    "![VueGen Logo](https://raw.githubusercontent.com/Multiomics-Analytics-Group/vuegen/main/docs/images/vuegen_logo.svg)": "home_page.md",
+    "![VueGen Logo](https://raw.githubusercontent.com/Multiomics-Analytics-Group/vuegen/HEAD/docs/images/logo/vuegen_logo.svg)": "home_page.md",
     "About the project": "about.md",
     "Installation": "installation.md",
     "Execution": "execution.md",

docs/vuegen_basic_case_study.ipynb

@@ -273,7 +273,7 @@
    },
    "outputs": [],
    "source": [
-    "vuegen_logo_path = \"https://raw.githubusercontent.com/Multiomics-Analytics-Group/vuegen/main/docs/images/vuegen_logo.svg\"\n",
+    "vuegen_logo_path = \"https://raw.githubusercontent.com/Multiomics-Analytics-Group/vuegen/main/docs/images/logo/vuegen_logo.png\"\n",
     "\n",
     "# Load the YAML file\n",
     "print(\n",
@@ -443,7 +443,7 @@
  ],
  "metadata": {
   "kernelspec": {
-   "display_name": "Python 3 (ipykernel)",
+   "display_name": "vuegen_py312",
    "language": "python",
    "name": "python3"
   },
@@ -457,7 +457,7 @@
    "name": "python",
    "nbconvert_exporter": "python",
    "pygments_lexer": "ipython3",
-   "version": "3.12.6"
+   "version": "3.12.9"
   }
  },
  "nbformat": 4,

docs/vuegen_basic_case_study_configfile.md

@@ -6,8 +6,8 @@ The [configuration file](https://github.com/Multiomics-Analytics-Group/vuegen/bl
 report:
   title: Basic Example Vuegen Demo Notebook
   description: A general description of the report.
-  graphical_abstract: https://raw.githubusercontent.com/Multiomics-Analytics-Group/vuegen/main/docs/images/vuegen_logo.png
-  logo: https://raw.githubusercontent.com/Multiomics-Analytics-Group/vuegen/main/docs/images/vuegen_logo.png
+  graphical_abstract: https://raw.githubusercontent.com/Multiomics-Analytics-Group/vuegen/main/docs/images/logo/vuegen_logo.png
+  logo: https://raw.githubusercontent.com/Multiomics-Analytics-Group/vuegen/main/docs/images/logo/vuegen_logo.png
 sections:
 - title: Plots
   description: This section contains example plots.

gui/Makefile

@@ -39,7 +39,7 @@ bundle:
 	--collect-all vl_convert \
 	--collect-all typing-extensions \
 	--add-data ../docs/example_data/Basic_example_vuegen_demo_notebook:example_data/Basic_example_vuegen_demo_notebook \
-	--add-data ../docs/images/vuegen_logo.png:. \
+	--add-data ../docs/images/logo/vuegen_logo.png:. \
 	app.py
 
 

tests/report_examples/Basic_example_vuegen_demo_notebook_cfg/streamlit_report/sections/Home/Homepage.py

@@ -8,7 +8,7 @@
     unsafe_allow_html=True)
 
 
-st.image('https://raw.githubusercontent.com/Multiomics-Analytics-Group/vuegen/main/docs/images/vuegen_logo.png', use_column_width=True)
+st.image('https://raw.githubusercontent.com/Multiomics-Analytics-Group/vuegen/main/docs/images/logo/vuegen_logo.png', use_column_width=True)
 footer = '''
 <style type="text/css">
 .footer {

tests/report_examples/Basic_example_vuegen_demo_notebook_cfg/streamlit_report/sections/report_manager.py

@@ -6,9 +6,9 @@
 
 st.set_page_config(layout="wide",
                    page_title="Basic Example Vuegen Demo Notebook",
-                   page_icon="https://raw.githubusercontent.com/Multiomics-Analytics-Group/vuegen/main/docs/images/vuegen_logo.png"
+                   page_icon="https://raw.githubusercontent.com/Multiomics-Analytics-Group/vuegen/main/docs/images/logo/vuegen_logo.png"
 )
-st.logo("https://raw.githubusercontent.com/Multiomics-Analytics-Group/vuegen/main/docs/images/vuegen_logo.png")
+st.logo("https://raw.githubusercontent.com/Multiomics-Analytics-Group/vuegen/main/docs/images/logo/vuegen_logo.png")
 
 
 st.markdown(