👷 Build(requirements.txt): update requirements.txt file to work with Docker and nextflow.

Author: sayalaruano

requirements.txt

@@ -1,122 +1,170 @@
-aiohappyeyeballs==2.4.3 ; python_version >= "3.9" and python_full_version != "3.9.7" and python_version < "4.0"
-aiohttp==3.10.10 ; python_version >= "3.9" and python_full_version != "3.9.7" and python_version < "4.0"
-aiosignal==1.3.1 ; python_version >= "3.9" and python_full_version != "3.9.7" and python_version < "4.0"
-altair==5.4.1 ; python_version >= "3.9" and python_full_version != "3.9.7" and python_version < "4.0"
-asttokens==2.4.1 ; python_version >= "3.9" and python_full_version != "3.9.7" and python_version < "4.0"
-async-timeout==4.0.3 ; python_version >= "3.9" and python_full_version != "3.9.7" and python_version < "3.11"
-attrs==24.2.0 ; python_version >= "3.9" and python_full_version != "3.9.7" and python_version < "4.0"
-beautifulsoup4==4.12.3 ; python_version >= "3.9" and python_full_version != "3.9.7" and python_version < "4.0"
-bleach==6.1.0 ; python_version >= "3.9" and python_full_version != "3.9.7" and python_version < "4.0"
-blinker==1.8.2 ; python_version >= "3.9" and python_full_version != "3.9.7" and python_version < "4.0"
-bokeh==2.4.3 ; python_version >= "3.9" and python_full_version != "3.9.7" and python_version < "4.0"
-cachetools==5.5.0 ; python_version >= "3.9" and python_full_version != "3.9.7" and python_version < "4.0"
-certifi==2024.8.30 ; python_version >= "3.9" and python_full_version != "3.9.7" and python_version < "4.0"
-cffi==1.17.1 ; python_version >= "3.9" and python_full_version != "3.9.7" and python_version < "4.0" and implementation_name == "pypy"
-charset-normalizer==3.3.2 ; python_version >= "3.9" and python_full_version != "3.9.7" and python_version < "4.0"
-click==8.1.7 ; python_version >= "3.9" and python_full_version != "3.9.7" and python_version < "4.0"
-colorama==0.4.6 ; python_version >= "3.9" and python_full_version != "3.9.7" and python_version < "4.0" and (platform_system == "Windows" or sys_platform == "win32")
-colorcet==3.1.0 ; python_version >= "3.9" and python_full_version != "3.9.7" and python_version < "4.0"
-contourpy==1.3.0 ; python_version >= "3.9" and python_full_version != "3.9.7" and python_version < "4.0"
-cssselect==1.2.0 ; python_version >= "3.9" and python_full_version != "3.9.7" and python_version < "4.0"
-cssutils==2.11.1 ; python_version >= "3.9" and python_full_version != "3.9.7" and python_version < "4.0"
-cycler==0.12.1 ; python_version >= "3.9" and python_full_version != "3.9.7" and python_version < "4.0"
-dataframe-image==0.2.6 ; python_version >= "3.9" and python_full_version != "3.9.7" and python_version < "4.0"
-decorator==5.1.1 ; python_version >= "3.9" and python_full_version != "3.9.7" and python_version < "4.0"
-defusedxml==0.7.1 ; python_version >= "3.9" and python_full_version != "3.9.7" and python_version < "4.0"
-et-xmlfile==1.1.0 ; python_version >= "3.9" and python_full_version != "3.9.7" and python_version < "4.0"
-exceptiongroup==1.2.2 ; python_version >= "3.9" and python_full_version != "3.9.7" and python_version < "3.11"
-executing==2.1.0 ; python_version >= "3.9" and python_full_version != "3.9.7" and python_version < "4.0"
-fastjsonschema==2.20.0 ; python_version >= "3.9" and python_full_version != "3.9.7" and python_version < "4.0"
-fonttools==4.54.1 ; python_version >= "3.9" and python_full_version != "3.9.7" and python_version < "4.0"
-frozenlist==1.5.0 ; python_version >= "3.9" and python_full_version != "3.9.7" and python_version < "4.0"
-gitdb==4.0.11 ; python_version >= "3.9" and python_full_version != "3.9.7" and python_version < "4.0"
-gitpython==3.1.43 ; python_version >= "3.9" and python_full_version != "3.9.7" and python_version < "4.0"
-holoviews==1.16.2 ; python_version >= "3.9" and python_full_version != "3.9.7" and python_version < "4.0"
-html2image==2.0.5 ; python_version >= "3.9" and python_version < "4.0" and python_full_version != "3.9.7"
-idna==3.10 ; python_version >= "3.9" and python_full_version != "3.9.7" and python_version < "4.0"
-importlib-metadata==6.11.0 ; python_version >= "3.9" and python_full_version != "3.9.7" and python_version < "3.10"
-importlib-resources==6.4.5 ; python_version >= "3.9" and python_full_version != "3.9.7" and python_version < "3.10"
-ipython==8.18.1 ; python_version >= "3.9" and python_full_version != "3.9.7" and python_version < "4.0"
-itables==2.2.2 ; python_version >= "3.9" and python_full_version != "3.9.7" and python_version < "4.0"
-jedi==0.19.1 ; python_version >= "3.9" and python_full_version != "3.9.7" and python_version < "4.0"
-jinja2==3.1.4 ; python_version >= "3.9" and python_full_version != "3.9.7" and python_version < "4.0"
-jsonpickle==3.3.0 ; python_version >= "3.9" and python_full_version != "3.9.7" and python_version < "4.0"
-jsonschema-specifications==2023.12.1 ; python_version >= "3.9" and python_full_version != "3.9.7" and python_version < "4.0"
-jsonschema==4.23.0 ; python_version >= "3.9" and python_full_version != "3.9.7" and python_version < "4.0"
-jupyter-client==8.6.3 ; python_version >= "3.9" and python_full_version != "3.9.7" and python_version < "4.0"
-jupyter-core==5.7.2 ; python_version >= "3.9" and python_full_version != "3.9.7" and python_version < "4.0"
-jupyterlab-pygments==0.3.0 ; python_version >= "3.9" and python_full_version != "3.9.7" and python_version < "4.0"
-kaleido==0.2.0 ; python_version >= "3.9" and python_full_version != "3.9.7" and python_version < "4.0"
-kiwisolver==1.4.7 ; python_version >= "3.9" and python_full_version != "3.9.7" and python_version < "4.0"
-lxml==5.3.0 ; python_version >= "3.9" and python_full_version != "3.9.7" and python_version < "4.0"
-markdown-it-py==3.0.0 ; python_version >= "3.9" and python_full_version != "3.9.7" and python_version < "4.0"
-markdown==3.7 ; python_version >= "3.9" and python_full_version != "3.9.7" and python_version < "4.0"
-markupsafe==2.1.5 ; python_version >= "3.9" and python_full_version != "3.9.7" and python_version < "4.0"
-matplotlib-inline==0.1.7 ; python_version >= "3.9" and python_full_version != "3.9.7" and python_version < "4.0"
-matplotlib==3.9.2 ; python_version >= "3.9" and python_full_version != "3.9.7" and python_version < "4.0"
-mdurl==0.1.2 ; python_version >= "3.9" and python_full_version != "3.9.7" and python_version < "4.0"
-mistune==3.0.2 ; python_version >= "3.9" and python_full_version != "3.9.7" and python_version < "4.0"
-more-itertools==10.5.0 ; python_version >= "3.9" and python_full_version != "3.9.7" and python_version < "4.0"
-multidict==6.1.0 ; python_version >= "3.9" and python_full_version != "3.9.7" and python_version < "4.0"
-narwhals==1.9.0 ; python_version >= "3.9" and python_full_version != "3.9.7" and python_version < "4.0"
-nbclient==0.10.0 ; python_version >= "3.9" and python_full_version != "3.9.7" and python_version < "4.0"
-nbconvert==7.16.4 ; python_version >= "3.9" and python_full_version != "3.9.7" and python_version < "4.0"
-nbformat==5.10.4 ; python_version >= "3.9" and python_full_version != "3.9.7" and python_version < "4.0"
-networkx==3.2.1 ; python_version >= "3.9" and python_full_version != "3.9.7" and python_version < "4.0"
-numpy==1.26.4 ; python_version >= "3.9" and python_full_version != "3.9.7" and python_version < "4.0"
-openpyxl==3.1.5 ; python_version >= "3.9" and python_full_version != "3.9.7" and python_version < "4.0"
-packaging==23.2 ; python_version >= "3.9" and python_full_version != "3.9.7" and python_version < "4.0"
-pandas==2.2.3 ; python_version >= "3.9" and python_full_version != "3.9.7" and python_version < "4.0"
-pandocfilters==1.5.1 ; python_version >= "3.9" and python_full_version != "3.9.7" and python_version < "4.0"
-panel==0.14.4 ; python_version >= "3.9" and python_full_version != "3.9.7" and python_version < "4.0"
-param==2.1.1 ; python_version >= "3.9" and python_full_version != "3.9.7" and python_version < "4.0"
-parso==0.8.4 ; python_version >= "3.9" and python_full_version != "3.9.7" and python_version < "4.0"
-pexpect==4.9.0 ; python_version >= "3.9" and python_full_version != "3.9.7" and python_version < "4.0" and sys_platform != "win32"
-pillow==9.5.0 ; python_version >= "3.9" and python_full_version != "3.9.7" and python_version < "4.0"
-platformdirs==4.3.6 ; python_version >= "3.9" and python_full_version != "3.9.7" and python_version < "4.0"
-plotly==5.15.0 ; python_version >= "3.9" and python_full_version != "3.9.7" and python_version < "4.0"
-prompt-toolkit==3.0.48 ; python_version >= "3.9" and python_full_version != "3.9.7" and python_version < "4.0"
-propcache==0.2.0 ; python_version >= "3.9" and python_full_version != "3.9.7" and python_version < "4.0"
-protobuf==4.25.5 ; python_version >= "3.9" and python_full_version != "3.9.7" and python_version < "4.0"
-ptyprocess==0.7.0 ; python_version >= "3.9" and python_full_version != "3.9.7" and python_version < "4.0" and sys_platform != "win32"
-pure-eval==0.2.3 ; python_version >= "3.9" and python_full_version != "3.9.7" and python_version < "4.0"
-pyarrow==17.0.0 ; python_version >= "3.9" and python_full_version != "3.9.7" and python_version < "4.0"
-pycparser==2.22 ; python_version >= "3.9" and python_full_version != "3.9.7" and python_version < "4.0" and implementation_name == "pypy"
-pyct==0.5.0 ; python_version >= "3.9" and python_full_version != "3.9.7" and python_version < "4.0"
-pydeck==0.9.1 ; python_version >= "3.9" and python_full_version != "3.9.7" and python_version < "4.0"
-pygments==2.18.0 ; python_version >= "3.9" and python_full_version != "3.9.7" and python_version < "4.0"
-pyparsing==3.2.0 ; python_version >= "3.9" and python_full_version != "3.9.7" and python_version < "4.0"
-python-dateutil==2.9.0.post0 ; python_version >= "3.9" and python_full_version != "3.9.7" and python_version < "4.0"
-pytz==2024.2 ; python_version >= "3.9" and python_full_version != "3.9.7" and python_version < "4.0"
-pyvis==0.3.2 ; python_version >= "3.9" and python_full_version != "3.9.7" and python_version < "4.0"
-pyviz-comms==3.0.3 ; python_version >= "3.9" and python_full_version != "3.9.7" and python_version < "4.0"
-pywin32==308 ; sys_platform == "win32" and platform_python_implementation != "PyPy" and python_version >= "3.9" and python_full_version != "3.9.7" and python_version < "4.0"
-pyyaml==6.0.2 ; python_version >= "3.9" and python_full_version != "3.9.7" and python_version < "4.0"
-pyzmq==26.2.0 ; python_version >= "3.9" and python_full_version != "3.9.7" and python_version < "4.0"
-referencing==0.35.1 ; python_version >= "3.9" and python_full_version != "3.9.7" and python_version < "4.0"
-requests==2.32.3 ; python_version >= "3.9" and python_full_version != "3.9.7" and python_version < "4.0"
-rich==13.9.1 ; python_version >= "3.9" and python_full_version != "3.9.7" and python_version < "4.0"
-rpds-py==0.20.0 ; python_version >= "3.9" and python_full_version != "3.9.7" and python_version < "4.0"
-setuptools==75.1.0 ; python_version >= "3.9" and python_full_version != "3.9.7" and python_version < "4.0"
-six==1.16.0 ; python_version >= "3.9" and python_full_version != "3.9.7" and python_version < "4.0"
-smmap==5.0.1 ; python_version >= "3.9" and python_full_version != "3.9.7" and python_version < "4.0"
-soupsieve==2.6 ; python_version >= "3.9" and python_full_version != "3.9.7" and python_version < "4.0"
-stack-data==0.6.3 ; python_version >= "3.9" and python_full_version != "3.9.7" and python_version < "4.0"
-streamlit==1.39.0 ; python_version >= "3.9" and python_full_version != "3.9.7" and python_version < "4.0"
-tenacity==8.5.0 ; python_version >= "3.9" and python_full_version != "3.9.7" and python_version < "4.0"
-tinycss2==1.4.0 ; python_version >= "3.9" and python_full_version != "3.9.7" and python_version < "4.0"
-toml==0.10.2 ; python_version >= "3.9" and python_full_version != "3.9.7" and python_version < "4.0"
-tornado==6.4.1 ; python_version >= "3.9" and python_full_version != "3.9.7" and python_version < "4.0"
-tqdm==4.66.5 ; python_version >= "3.9" and python_full_version != "3.9.7" and python_version < "4.0"
-traitlets==5.14.3 ; python_version >= "3.9" and python_full_version != "3.9.7" and python_version < "4.0"
-typing-extensions==4.12.2 ; python_version >= "3.9" and python_full_version != "3.9.7" and python_version < "4.0"
-tzdata==2024.2 ; python_version >= "3.9" and python_full_version != "3.9.7" and python_version < "4.0"
-urllib3==2.2.3 ; python_version >= "3.9" and python_full_version != "3.9.7" and python_version < "4.0"
-vl-convert-python==1.7.0 ; python_version >= "3.9" and python_full_version != "3.9.7" and python_version < "4.0"
-watchdog==3.0.0 ; python_version >= "3.9" and python_full_version != "3.9.7" and python_version < "4.0"
-wcwidth==0.2.13 ; python_version >= "3.9" and python_full_version != "3.9.7" and python_version < "4.0"
-webencodings==0.5.1 ; python_version >= "3.9" and python_full_version != "3.9.7" and python_version < "4.0"
-websocket-client==1.8.0 ; python_version >= "3.9" and python_version < "4.0" and python_full_version != "3.9.7"
-xlrd==2.0.1 ; python_version >= "3.9" and python_full_version != "3.9.7" and python_version < "4.0"
-yarl==1.17.1 ; python_version >= "3.9" and python_full_version != "3.9.7" and python_version < "4.0"
-zipp==3.20.2 ; python_version >= "3.9" and python_full_version != "3.9.7" and python_version < "3.10"
+aiohappyeyeballs==2.4.4 
+aiohttp==3.11.10 
+aiosignal==1.3.2 
+altair==5.5.0 
+anyio==4.7.0 
+appnope==0.1.4
+argon2-cffi-bindings==21.2.0 
+argon2-cffi==23.1.0 
+arrow==1.3.0 
+asttokens==3.0.0 
+async-lru==2.0.4 
+async-timeout==5.0.1 
+attrs==24.3.0 
+babel==2.16.0 
+beautifulsoup4==4.12.3 
+bleach==6.2.0 
+blinker==1.9.0 
+bokeh==2.4.3 
+cachetools==5.5.0 
+certifi==2024.12.14 
+cffi==1.17.1 
+charset-normalizer==3.4.0 
+click==8.1.7 
+colorama==0.4.6
+colorcet==3.1.0 
+comm==0.2.2 
+contourpy==1.3.0 
+cssselect==1.2.0 
+cssutils==2.11.1 
+cycler==0.12.1 
+dataframe-image==0.2.6 
+debugpy==1.8.11 
+decorator==5.1.1 
+defusedxml==0.7.1 
+et-xmlfile==2.0.0 
+exceptiongroup==1.2.2 
+executing==2.1.0 
+fastjsonschema==2.21.1 
+fonttools==4.55.3 
+fqdn==1.5.1 
+frozenlist==1.5.0 
+gitdb==4.0.11 
+gitpython==3.1.43 
+h11==0.14.0 
+holoviews==1.16.2 
+html2image==2.0.5 
+httpcore==1.0.7 
+httpx==0.28.1 
+idna==3.10 
+importlib-metadata==8.5.0 
+importlib-resources==6.4.5 
+ipykernel==6.29.5 
+ipython==8.18.1 
+ipywidgets==8.1.5 
+isoduration==20.11.0 
+itables==2.2.4 
+jedi==0.19.2 
+jinja2==3.1.4 
+json5==0.10.0 
+jsonpickle==4.0.1 
+jsonpointer==3.0.0 
+jsonschema-specifications==2024.10.1 
+jsonschema==4.23.0 
+jsonschema[format-nongpl]==4.23.0 
+jupyter-client==8.6.3 
+jupyter-console==6.6.3 
+jupyter-core==5.7.2 
+jupyter-events==0.11.0 
+jupyter-lsp==2.2.5 
+jupyter-server-terminals==0.5.3 
+jupyter-server==2.14.2 
+jupyter==1.1.1 
+jupyterlab-pygments==0.3.0 
+jupyterlab-server==2.27.3 
+jupyterlab-widgets==3.0.13 
+jupyterlab==4.3.3 
+kaleido==0.2.1
+kiwisolver==1.4.7 
+lxml==5.3.0 
+markdown-it-py==3.0.0 
+markdown==3.7 
+markupsafe==3.0.2 
+matplotlib-inline==0.1.7 
+matplotlib==3.9.4 
+mdurl==0.1.2 
+mistune==3.0.2 
+more-itertools==10.5.0 
+multidict==6.1.0 
+narwhals==1.18.4 
+nbclient==0.10.1 
+nbconvert==7.16.4 
+nbformat==5.10.4 
+nest-asyncio==1.6.0 
+networkx==3.2.1 
+notebook-shim==0.2.4 
+notebook==7.3.1 
+numpy==2.0.2 
+openpyxl==3.1.5 
+overrides==7.7.0 
+packaging==24.2 
+pandas==2.2.3 
+pandas[parquet]==2.2.3 
+pandocfilters==1.5.1 
+panel==0.14.4 
+param==2.2.0 
+parso==0.8.4 
+pexpect==4.9.0 
+pillow==10.4.0 
+platformdirs==4.3.6 
+plotly==5.15.0 
+prometheus-client==0.21.1 
+prompt-toolkit==3.0.48 
+propcache==0.2.1 
+protobuf==5.29.1 
+psutil==6.1.0 
+ptyprocess==0.7.0 
+pure-eval==0.2.3 
+pyarrow==18.1.0 
+pycparser==2.22 
+pyct==0.5.0 
+pydeck==0.9.1 
+pygments==2.18.0 
+pyparsing==3.2.0 
+python-dateutil==2.9.0.post0 
+python-json-logger==3.2.1 
+pytz==2024.2 
+pyvis==0.3.2 
+pyviz-comms==3.0.3 
+pyyaml==6.0.2 
+pyzmq==26.2.0 
+quarto-cli==1.6.37 
+referencing==0.35.1 
+requests==2.32.3 
+rfc3339-validator==0.1.4 
+rfc3986-validator==0.1.1 
+rich==13.9.4 
+rpds-py==0.22.3 
+send2trash==1.8.3 
+setuptools==75.6.0 
+six==1.17.0 
+smmap==5.0.1 
+sniffio==1.3.1 
+soupsieve==2.6 
+stack-data==0.6.3 
+streamlit==1.39.0 
+strenum==0.4.15 
+tenacity==9.0.0 
+terminado==0.18.1 
+tinycss2==1.4.0 
+toml==0.10.2 
+tomli==2.2.1 
+tornado==6.4.2 
+tqdm==4.67.1 
+traitlets==5.14.3 
+types-python-dateutil==2.9.0.20241206 
+typing-extensions==4.12.2 
+tzdata==2024.2 
+uri-template==1.3.0 
+urllib3==2.2.3 
+vl-convert-python==1.7.0 
+watchdog==3.0.0 
+wcwidth==0.2.13 
+webcolors==24.11.1 
+webencodings==0.5.1 
+websocket-client==1.8.0 
+wheel==0.45.1 
+widgetsnbextension==4.0.13 
+xlrd==2.0.1 
+yarl==1.18.3 
+zipp==3.21.0