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Add basic example directory and notebook (#63)
* 🙈 Docs: update .gitignore file * 📝 Docs(README.md): Update image links and installation instructions on the README. ALos, updated the logo, class diagram, and graphical abstract images * 📝 Docs: update graphical abstract figure * 📝 Docs: Add basic example vuegen demo notebook and directory. Closes #58
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