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✅ test all report types based on quarto (update static path setting)
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+36
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‎.github/workflows/cdci.yml‎

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@@ -127,7 +127,17 @@ jobs:
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echo "Error: One or more protected files have been modified."
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exit 1
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fi
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- name: check for changes in quarto report files
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run: |
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# write quarto based report to test folder
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for format in html pdf docx odt revealjs pptx jupyter; do
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vuegen -dir docs/example_data/Basic_example_vuegen_demo_notebook -output_dir tests/report_examples/Basic_example_vuegen_demo_notebook/$format -rt $format
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# Check for changes
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if git diff tests/report_examples | grep .; then
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echo Failed for report: $format
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echo "Error: One or more protected files have been modified."
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exit 1
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fi
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publish:
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name: Publish package to PyPI

‎tests/report_examples/Basic_example_vuegen_demo_notebook/docx/quarto_report/quarto_report.qmd‎

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@@ -193,7 +193,7 @@ fig_plotly.write_image("static/Plotly_Plot_R.png")
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df = pd.read_csv(report_dir / '../../../../../docs/example_data/Basic_example_vuegen_demo_notebook/2_Dataframes/1_All_formats/1_phyla_correlation_network_csv.csv')
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df.dfi.export('Phyla_Correlation_Network_Csv.png', max_rows=10, max_cols=5, table_conversion='matplotlib')
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df.dfi.export('static/Phyla_Correlation_Network_Csv.png', max_rows=10, max_cols=5, table_conversion='matplotlib')
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```
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![](static/Phyla_Correlation_Network_Csv.png){fig-alt= width=90%}
@@ -205,7 +205,7 @@ df.dfi.export('Phyla_Correlation_Network_Csv.png', max_rows=10, max_cols=5, tabl
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df = pd.read_excel(report_dir / '../../../../../docs/example_data/Basic_example_vuegen_demo_notebook/2_Dataframes/1_All_formats/2_abundance_table_example_xls.xls')
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df.dfi.export('Abundance_Table_Example_Xls.png', max_rows=10, max_cols=5, table_conversion='matplotlib')
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df.dfi.export('static/Abundance_Table_Example_Xls.png', max_rows=10, max_cols=5, table_conversion='matplotlib')
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```
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![](static/Abundance_Table_Example_Xls.png){fig-alt= width=90%}
@@ -217,7 +217,7 @@ df.dfi.export('Abundance_Table_Example_Xls.png', max_rows=10, max_cols=5, table_
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df = pd.read_excel(report_dir / '../../../../../docs/example_data/Basic_example_vuegen_demo_notebook/2_Dataframes/1_All_formats/2_abundance_table_example_xls.xls', sheet_name='infos')
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df.dfi.export('Abundance_Table_Example_Xls_infos.png', max_rows=10, max_cols=5, table_conversion='matplotlib')
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df.dfi.export('static/Abundance_Table_Example_Xls_infos.png', max_rows=10, max_cols=5, table_conversion='matplotlib')
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```
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![](static/Abundance_Table_Example_Xls_infos.png){fig-alt= width=90%}
@@ -229,7 +229,7 @@ df.dfi.export('Abundance_Table_Example_Xls_infos.png', max_rows=10, max_cols=5,
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df = pd.read_table(report_dir / '../../../../../docs/example_data/Basic_example_vuegen_demo_notebook/2_Dataframes/1_All_formats/3_sample_info_example_txt.txt')
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df.dfi.export('Sample_Info_Example_Txt.png', max_rows=10, max_cols=5, table_conversion='matplotlib')
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df.dfi.export('static/Sample_Info_Example_Txt.png', max_rows=10, max_cols=5, table_conversion='matplotlib')
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```
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![](static/Sample_Info_Example_Txt.png){fig-alt= width=90%}
@@ -241,7 +241,7 @@ df.dfi.export('Sample_Info_Example_Txt.png', max_rows=10, max_cols=5, table_conv
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df = pd.read_parquet(report_dir / '../../../../../docs/example_data/Basic_example_vuegen_demo_notebook/2_Dataframes/1_All_formats/4_sample_info_example_parquet.parquet')
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df.dfi.export('Sample_Info_Example_Parquet.png', max_rows=10, max_cols=5, table_conversion='matplotlib')
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df.dfi.export('static/Sample_Info_Example_Parquet.png', max_rows=10, max_cols=5, table_conversion='matplotlib')
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```
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![](static/Sample_Info_Example_Parquet.png){fig-alt= width=90%}
@@ -253,7 +253,7 @@ df.dfi.export('Sample_Info_Example_Parquet.png', max_rows=10, max_cols=5, table_
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df = pd.read_excel(report_dir / '../../../../../docs/example_data/Basic_example_vuegen_demo_notebook/2_Dataframes/1_All_formats/5_example_xlsx.xlsx')
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df.dfi.export('Example_Xlsx.png', max_rows=10, max_cols=5, table_conversion='matplotlib')
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df.dfi.export('static/Example_Xlsx.png', max_rows=10, max_cols=5, table_conversion='matplotlib')
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```
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![](static/Example_Xlsx.png){fig-alt= width=90%}
@@ -288,7 +288,7 @@ Optional description for subsection.
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### Readme
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```{python}
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#| label: 'Readme 4'
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#| label: 'Readme 3'
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#| fig-cap: ""
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‎tests/report_examples/Basic_example_vuegen_demo_notebook/html/quarto_report/quarto_report.qmd‎

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@@ -307,7 +307,7 @@ Optional description for subsection.
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### Readme
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```{python}
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#| label: 'Readme 4'
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#| label: 'Readme 3'
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#| fig-cap: ""
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‎tests/report_examples/Basic_example_vuegen_demo_notebook/jupyter/quarto_report/quarto_report.qmd‎

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@@ -307,7 +307,7 @@ Optional description for subsection.
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### Readme
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```{python}
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#| label: 'Readme 4'
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#| label: 'Readme 3'
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#| fig-cap: ""
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‎tests/report_examples/Basic_example_vuegen_demo_notebook/odt/quarto_report/quarto_report.qmd‎

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@@ -193,7 +193,7 @@ fig_plotly.write_image("static/Plotly_Plot_R.png")
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df = pd.read_csv(report_dir / '../../../../../docs/example_data/Basic_example_vuegen_demo_notebook/2_Dataframes/1_All_formats/1_phyla_correlation_network_csv.csv')
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df.dfi.export('Phyla_Correlation_Network_Csv.png', max_rows=10, max_cols=5, table_conversion='matplotlib')
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df.dfi.export('static/Phyla_Correlation_Network_Csv.png', max_rows=10, max_cols=5, table_conversion='matplotlib')
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```
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![](static/Phyla_Correlation_Network_Csv.png){fig-alt= width=90%}
@@ -205,7 +205,7 @@ df.dfi.export('Phyla_Correlation_Network_Csv.png', max_rows=10, max_cols=5, tabl
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df = pd.read_excel(report_dir / '../../../../../docs/example_data/Basic_example_vuegen_demo_notebook/2_Dataframes/1_All_formats/2_abundance_table_example_xls.xls')
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df.dfi.export('Abundance_Table_Example_Xls.png', max_rows=10, max_cols=5, table_conversion='matplotlib')
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df.dfi.export('static/Abundance_Table_Example_Xls.png', max_rows=10, max_cols=5, table_conversion='matplotlib')
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```
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![](static/Abundance_Table_Example_Xls.png){fig-alt= width=90%}
@@ -217,7 +217,7 @@ df.dfi.export('Abundance_Table_Example_Xls.png', max_rows=10, max_cols=5, table_
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df = pd.read_excel(report_dir / '../../../../../docs/example_data/Basic_example_vuegen_demo_notebook/2_Dataframes/1_All_formats/2_abundance_table_example_xls.xls', sheet_name='infos')
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df.dfi.export('Abundance_Table_Example_Xls_infos.png', max_rows=10, max_cols=5, table_conversion='matplotlib')
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df.dfi.export('static/Abundance_Table_Example_Xls_infos.png', max_rows=10, max_cols=5, table_conversion='matplotlib')
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```
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![](static/Abundance_Table_Example_Xls_infos.png){fig-alt= width=90%}
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df = pd.read_table(report_dir / '../../../../../docs/example_data/Basic_example_vuegen_demo_notebook/2_Dataframes/1_All_formats/3_sample_info_example_txt.txt')
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df.dfi.export('Sample_Info_Example_Txt.png', max_rows=10, max_cols=5, table_conversion='matplotlib')
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df.dfi.export('static/Sample_Info_Example_Txt.png', max_rows=10, max_cols=5, table_conversion='matplotlib')
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```
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![](static/Sample_Info_Example_Txt.png){fig-alt= width=90%}
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df = pd.read_parquet(report_dir / '../../../../../docs/example_data/Basic_example_vuegen_demo_notebook/2_Dataframes/1_All_formats/4_sample_info_example_parquet.parquet')
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df.dfi.export('Sample_Info_Example_Parquet.png', max_rows=10, max_cols=5, table_conversion='matplotlib')
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df.dfi.export('static/Sample_Info_Example_Parquet.png', max_rows=10, max_cols=5, table_conversion='matplotlib')
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```
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![](static/Sample_Info_Example_Parquet.png){fig-alt= width=90%}
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df = pd.read_excel(report_dir / '../../../../../docs/example_data/Basic_example_vuegen_demo_notebook/2_Dataframes/1_All_formats/5_example_xlsx.xlsx')
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df.dfi.export('Example_Xlsx.png', max_rows=10, max_cols=5, table_conversion='matplotlib')
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df.dfi.export('static/Example_Xlsx.png', max_rows=10, max_cols=5, table_conversion='matplotlib')
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```
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![](static/Example_Xlsx.png){fig-alt= width=90%}
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### Readme
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```{python}
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#| label: 'Readme 4'
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#| label: 'Readme 3'
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#| fig-cap: ""
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‎tests/report_examples/Basic_example_vuegen_demo_notebook/pdf/quarto_report/quarto_report.qmd‎

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@@ -298,7 +298,7 @@ Optional description for subsection.
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### Readme
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```{python}
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#| label: 'Readme 4'
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#| label: 'Readme 3'
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#| fig-cap: ""
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‎tests/report_examples/Basic_example_vuegen_demo_notebook/pptx/quarto_report/quarto_report.qmd‎

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Original file line numberDiff line numberDiff line change
@@ -194,7 +194,7 @@ fig_plotly.write_image("static/Plotly_Plot_R.png")
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df = pd.read_csv(report_dir / '../../../../../docs/example_data/Basic_example_vuegen_demo_notebook/2_Dataframes/1_All_formats/1_phyla_correlation_network_csv.csv')
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df.dfi.export('Phyla_Correlation_Network_Csv.png', max_rows=10, max_cols=5, table_conversion='matplotlib')
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df.dfi.export('static/Phyla_Correlation_Network_Csv.png', max_rows=10, max_cols=5, table_conversion='matplotlib')
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```
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![](static/Phyla_Correlation_Network_Csv.png){fig-alt= width=90%}
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df = pd.read_excel(report_dir / '../../../../../docs/example_data/Basic_example_vuegen_demo_notebook/2_Dataframes/1_All_formats/2_abundance_table_example_xls.xls')
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df.dfi.export('Abundance_Table_Example_Xls.png', max_rows=10, max_cols=5, table_conversion='matplotlib')
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df.dfi.export('static/Abundance_Table_Example_Xls.png', max_rows=10, max_cols=5, table_conversion='matplotlib')
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```
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![](static/Abundance_Table_Example_Xls.png){fig-alt= width=90%}
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df = pd.read_excel(report_dir / '../../../../../docs/example_data/Basic_example_vuegen_demo_notebook/2_Dataframes/1_All_formats/2_abundance_table_example_xls.xls', sheet_name='infos')
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df.dfi.export('Abundance_Table_Example_Xls_infos.png', max_rows=10, max_cols=5, table_conversion='matplotlib')
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df.dfi.export('static/Abundance_Table_Example_Xls_infos.png', max_rows=10, max_cols=5, table_conversion='matplotlib')
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```
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![](static/Abundance_Table_Example_Xls_infos.png){fig-alt= width=90%}
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df = pd.read_table(report_dir / '../../../../../docs/example_data/Basic_example_vuegen_demo_notebook/2_Dataframes/1_All_formats/3_sample_info_example_txt.txt')
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df.dfi.export('Sample_Info_Example_Txt.png', max_rows=10, max_cols=5, table_conversion='matplotlib')
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df.dfi.export('static/Sample_Info_Example_Txt.png', max_rows=10, max_cols=5, table_conversion='matplotlib')
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```
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![](static/Sample_Info_Example_Txt.png){fig-alt= width=90%}
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df = pd.read_parquet(report_dir / '../../../../../docs/example_data/Basic_example_vuegen_demo_notebook/2_Dataframes/1_All_formats/4_sample_info_example_parquet.parquet')
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df.dfi.export('Sample_Info_Example_Parquet.png', max_rows=10, max_cols=5, table_conversion='matplotlib')
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df.dfi.export('static/Sample_Info_Example_Parquet.png', max_rows=10, max_cols=5, table_conversion='matplotlib')
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```
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![](static/Sample_Info_Example_Parquet.png){fig-alt= width=90%}
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df = pd.read_excel(report_dir / '../../../../../docs/example_data/Basic_example_vuegen_demo_notebook/2_Dataframes/1_All_formats/5_example_xlsx.xlsx')
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df.dfi.export('Example_Xlsx.png', max_rows=10, max_cols=5, table_conversion='matplotlib')
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df.dfi.export('static/Example_Xlsx.png', max_rows=10, max_cols=5, table_conversion='matplotlib')
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```
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![](static/Example_Xlsx.png){fig-alt= width=90%}
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### Readme
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```{python}
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#| label: 'Readme 4'
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#| label: 'Readme 3'
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#| fig-cap: ""
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‎tests/report_examples/Basic_example_vuegen_demo_notebook/revealjs/quarto_report/quarto_report.qmd‎

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### Readme
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```{python}
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#| label: 'Readme 4'
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#| label: 'Readme 3'
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#| fig-cap: ""
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