🔀 Merge changes from github repo

Author: sayalaruano

.github/workflows/cdci.yml

@@ -95,3 +95,26 @@ jobs:
           cd docs
           vuegen -dir example_data/Earth_microbiome_vuegen_demo_notebook -rt jupyter
           vuegen -c example_data/Earth_microbiome_vuegen_demo_notebook/Earth_microbiome_vuegen_demo_notebook_config.yaml -rt jupyter
+
+  publish:
+    name: Publish package to PyPI
+    if: startsWith(github.ref, 'refs/tags')
+    permissions:
+      id-token: write
+    needs:
+      - test
+      - other-reports
+    runs-on: ubuntu-latest
+
+    steps:
+      - uses: actions/checkout@v4
+  
+      - uses: actions/setup-python@v5
+        with:
+          python-version: "3.11"
+      - name: Install twine and build
+        run: python -m pip install --upgrade twine build
+      - name: Build
+        run: python -m build
+      - name: Publish package distributions to PyPI
+        uses: pypa/gh-action-pypi-publish@release/v1

.github/workflows/docs.yml

@@ -1,4 +1,4 @@
-name: Test documentation building (until it's moved to ReadTheDocs)
+name: Test documentation building, and publish report to GitHub Pages
 
 on:
   push:
@@ -35,6 +35,16 @@ jobs:
         run: |
             cd docs
             sphinx-build -n --keep-going -b html ./ ./_build/
+      - name: Rename entry point of report to index.html
+        run: |
+            mv docs/quarto_report/quarto_report.html docs/quarto_report/index.html
+      - name: Publish html report to github pages
+        # Only publish a new static report upon a new release -> can be changed.
+        if: startsWith(github.ref, 'refs/tags')
+        uses: peaceiris/actions-gh-pages@v4
+        with:
+          github_token: ${{ secrets.GITHUB_TOKEN }}
+          publish_dir: docs/quarto_report/
       # - name: save artifacts
       #   uses: actions/upload-artifact@v4
       #   with:

pyproject.toml

@@ -1,11 +1,14 @@
-[tool.poetry]
+[project]
 name = "vuegen"
-version = "0.1.0"
+dynamic = ["version"]
+
+[tool.poetry]
 description = "Module to generate automatic web interface reports with visualizations"
 authors = ["MoNA group"]
 license = "MIT"
 readme = "README.md"
 repository = "https://github.com/Multiomics-Analytics-Group/vuegen"
+version = "0.1.0"
 
 [tool.poetry.dependencies]
 python = ">=3.9,<3.9.7 || >3.9.7,<4.0"
@@ -39,9 +42,16 @@ quarto-cli = "*"
 [tool.poetry.group.dev.dependencies]
 ipykernel = {version="^6.29.5", optional=true}
 
+[tool.poetry.requires-plugins]
+poetry-dynamic-versioning = { version = ">=1.0.0,<2.0.0", extras = ["plugin"] }
+
+ 
+[tool.poetry-dynamic-versioning]
+enable = true
+
 [build-system]
-requires = ["poetry-core"]
-build-backend = "poetry.core.masonry.api"
+requires = ["poetry-core>=1.0.0", "poetry-dynamic-versioning>=1.0.0,<2.0.0"]
+build-backend = "poetry_dynamic_versioning.backend"
 
 # https://stackoverflow.com/a/60990574/9684872
 [tool.poetry.extras]