🐛 Fix(config_generator): update infer_component_metadata to identify edgelist and adjlist nets stored as csv or txt

Author: sayalaruano

example_data/MicW2Graph/2_Microbial_Association_Networks/2_Network_visualization2/1_man_example.csv renamed to example_data/MicW2Graph/2_Microbial_Association_Networks/2_Network_visualization2/1_man_example_edgelist.csv

@@ -26,7 +26,7 @@ sections:
       component_type: dataframe
       file_format: csv
       delimiter: ','
-    - title: Abundance Data Allbiomes xls
+    - title: Abundance Data Allbiomes
       file_path: /Users/asaru/Documents/DTU/MoNA/vuegen/example_data/MicW2Graph/1_Exploratory_Data_Analysis/1_Abundance_data/4_abundance_data_allbiomes.xls
       description: ''
       component_type: dataframe
@@ -54,7 +54,7 @@ sections:
       description: ''
       component_type: dataframe
       file_format: parquet
-    - title: Sample Info Allbiomes txt
+    - title: Sample Info Allbiomes
       file_path: /Users/asaru/Documents/DTU/MoNA/vuegen/example_data/MicW2Graph/1_Exploratory_Data_Analysis/2_Sample_data/5_sample_info_allbiomes.txt
       description: ''
       component_type: dataframe
@@ -81,12 +81,12 @@ sections:
   - title: Network Visualization2
     description: ''
     components:
-    - title: Man Example
-      file_path: /Users/asaru/Documents/DTU/MoNA/vuegen/example_data/MicW2Graph/2_Microbial_Association_Networks/2_Network_visualization2/1_man_example.csv
+    - title: Man Example Edgelist
+      file_path: /Users/asaru/Documents/DTU/MoNA/vuegen/example_data/MicW2Graph/2_Microbial_Association_Networks/2_Network_visualization2/1_man_example_edgelist.csv
       description: ''
-      component_type: dataframe
-      file_format: csv
-      delimiter: ','
+      component_type: plot
+      plot_type: interactive_network
+      csv_network_format: edgelist
   - title: Network Visualization3
     description: ''
     components:

example_data/MicW2Graph/MicW2Graph_config.yaml

@@ -57,13 +57,23 @@ def infer_component_metadata(file: Path) -> Dict[str, Union[str, None]]:
             metadata["plot_type"] = "altair"
         else:
             metadata["plot_type"] = "unknown"
-    elif ext in [".csv", ".txt", ".xls", ".xlsx", ".parquet"]:
+    elif ext in [".csv", ".txt"]:
+        # Check for network-related keywords
+        if "edgelist" in file.stem.lower():
+            metadata["component_type"] = "plot"
+            metadata["plot_type"] = "interactive_network"
+            metadata["csv_network_format"] = "edgelist"
+        elif "adjlist" in file.stem.lower():
+            metadata["component_type"] = "plot"
+            metadata["plot_type"] = "interactive_network"
+            metadata["csv_network_format"] = "adjlist"
+        else:
+            metadata["component_type"] = "dataframe"
+            metadata["file_format"] = ext.lstrip(".")
+            metadata["delimiter"] = "," if ext == ".csv" else "\\t"
+    elif ext in [".xls", ".xlsx", ".parquet"]:
         metadata["component_type"] = "dataframe"
         metadata["file_format"] = ext.lstrip(".")
-        if ext == ".csv":
-            metadata["delimiter"] = ","
-        elif ext == ".txt":
-            metadata["delimiter"] = "\\t"
     elif ext == ".md":
         metadata["component_type"] = "markdown"
     else:
@@ -90,8 +100,9 @@ def get_sort_key(item: Path) -> tuple:
         if parts[0].isdigit():
             numeric_prefix = int(parts[0])
         else:
-            numeric_prefix = float('inf')  # Non-numeric prefixes go to the end
-        return numeric_prefix, item.name.lower()  # Use `.lower()` for consistent sorting
+            # Non-numeric prefixes go to the end
+            numeric_prefix = float('inf')  
+        return numeric_prefix, item.name.lower()  
 
     return sorted(items, key=get_sort_key)