|
1384 | 1384 | "report_generator.get_report(dir_path = base_output_dir, report_type = report_type, logger = logger)" |
1385 | 1385 | ] |
1386 | 1386 | }, |
| 1387 | + { |
| 1388 | + "cell_type": "markdown", |
| 1389 | + "metadata": {}, |
| 1390 | + "source": [ |
| 1391 | + "### 4.3. HTML report" |
| 1392 | + ] |
| 1393 | + }, |
| 1394 | + { |
| 1395 | + "cell_type": "code", |
| 1396 | + "execution_count": null, |
| 1397 | + "metadata": {}, |
| 1398 | + "outputs": [], |
| 1399 | + "source": [ |
| 1400 | + "report_type = \"hml\"\n", |
| 1401 | + "report_name = \"Earth_microbiome_vuegen_demo_notebook_dir\"\n", |
| 1402 | + "\n", |
| 1403 | + "# Initialize logger\n", |
| 1404 | + "logger = get_logger(f\"{report_type}_report_{report_name}\")\n", |
| 1405 | + "\n", |
| 1406 | + "# Generate the report\n", |
| 1407 | + "report_generator.get_report(dir_path = base_output_dir, report_type = report_type, logger = logger)" |
| 1408 | + ] |
| 1409 | + }, |
1387 | 1410 | { |
1388 | 1411 | "cell_type": "markdown", |
1389 | 1412 | "metadata": {}, |
|
1560 | 1583 | "outputs": [], |
1561 | 1584 | "source": [ |
1562 | 1585 | "# Test the changes by generarating the report from the modified YAML file\n", |
1563 | | - "report_type = \"Revealjs\"\n", |
| 1586 | + "report_type = \"revealjs\"\n", |
| 1587 | + "report_name = \"Earth_microbiome_vuegen_demo_notebook_config_extended\"\n", |
| 1588 | + "\n", |
| 1589 | + "# Initialize logger\n", |
| 1590 | + "logger = get_logger(f\"{report_type}_report_{report_name}\")\n", |
| 1591 | + "\n", |
| 1592 | + "# Generate the report\n", |
| 1593 | + "report_generator.get_report(config_path = config_path, report_type = report_type, logger = logger)" |
| 1594 | + ] |
| 1595 | + }, |
| 1596 | + { |
| 1597 | + "cell_type": "markdown", |
| 1598 | + "metadata": {}, |
| 1599 | + "source": [ |
| 1600 | + "### 5.7. HTML report with the extended configuration file" |
| 1601 | + ] |
| 1602 | + }, |
| 1603 | + { |
| 1604 | + "cell_type": "code", |
| 1605 | + "execution_count": null, |
| 1606 | + "metadata": {}, |
| 1607 | + "outputs": [], |
| 1608 | + "source": [ |
| 1609 | + "# Test the changes by generarating the report from the modified YAML file\n", |
| 1610 | + "report_type = \"html\"\n", |
1564 | 1611 | "report_name = \"Earth_microbiome_vuegen_demo_notebook_config_extended\"\n", |
1565 | 1612 | "\n", |
1566 | 1613 | "# Initialize logger\n", |
|
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