Change metadata_manager.py name to config_manager.py and also the class name to make clear the purpose of this script

Author: sayalaruano

report_config_micw2graph.yaml

@@ -20,15 +20,15 @@ sections:
           - title: "Top 5 species by biome (plotly)"
             component_type: "plot"
             plot_type: "plotly"
-            file_path: "https://raw.githubusercontent.com/JosefineTM/DemProt_report/main/example_data/MicW2Graph/top_species_plot_biome.json"
+            file_path: "https://raw.githubusercontent.com/sayalaruano/report_generator_st_cloud_test/main/example_data/MicW2Graph/top_species_plot_biome.json"
             caption: "Optional caption"
           - title: "Multiline plot (altair)"
             component_type: "plot"
             plot_type: "altair"
             file_path: "example_data/altair_multilineplot.json"
           - title: "Abundance data for all studies (csv)"
             component_type: "dataframe"
-            file_path: "https://raw.githubusercontent.com/JosefineTM/DemProt_report/main/example_data/MicW2Graph/abundance_data_allbiomes.csv"
+            file_path: "https://raw.githubusercontent.com/sayalaruano/report_generator_st_cloud_test/main/example_data/MicW2Graph/abundance_data_allbiomes.csv"
             file_format: "csv"
             delimiter: ","
           - title: "Abundance data for all studies (xls)"
@@ -58,7 +58,7 @@ sections:
         components:
           - title: "Markdown example"
             component_type: "markdown"
-            file_path: "https://raw.githubusercontent.com/JosefineTM/DemProt_report/main/example_data/test_md.md"
+            file_path: "https://raw.githubusercontent.com/sayalaruano/report_generator_st_cloud_test/main/example_data/test_md.md"
   - title: "Microbial Association Networks"
     subsections:
       - title: "Network Visualization1"
@@ -79,7 +79,7 @@ sections:
           - title: "Network3 (remote html)"
             component_type: "plot"
             plot_type: "interactive_network"
-            file_path: "https://rawcdn.githack.com/JosefineTM/DemProt_report/3fca83b18e8b0666dff8b03fcdcf3d05d0d2541a/example_data/network1.html"
+            file_path: "https://rawcdn.githack.com/sayalaruano/report_generator_st_cloud_test/62a9ceec2281c54b55e99017f2bddc954e7db311/example_data/network1.html"
       - title: "Network Visualization4"
         components:
           - title: "Network4 (html)"

vuegen/metadata_manager.py renamed to vuegen/config_manager.py

@@ -1,13 +1,13 @@
 import report as r
 from utils import get_logger, assert_enum_value
 
-class MetadataManager:
+class ConfigManager:
     """
-    Class for handling metadata of reports from YAML files and creating report objects.
+    Class for handling metadata of reports from YAML config file and creating report objects.
     """
     def __init__(self, logger=None):
         """
-        Initializes the MetadataManager with a logger.
+        Initializes the ConfigManager with a logger.
 
         Parameters
         ----------

vuegen/report_generator.py

@@ -1,6 +1,6 @@
 from streamlit_reportview import StreamlitReportView
 from quarto_reportview import QuartoReportView
-from metadata_manager import MetadataManager
+from config_manager import ConfigManager
 from utils import assert_enum_value
 from report import ReportType
 import logging
@@ -23,8 +23,8 @@ def get_report(config: dict, report_type: str, logger: logging.Logger) -> None:
     ValueError
         If an unsupported report engine, report type, or report format are provided.
     """
-    # Load report object and metadata from the YAML file
-    yaml_manager = MetadataManager(logger)
+    # Load report object and metadata from the YAML config file
+    yaml_manager = ConfigManager(logger)
     report, report_metadata = yaml_manager.initialize_report(config)
 
     # Validate and convert the report type to its enum value