💚 Correct paths relative to the docs folder to pass CI tests

Author: sayalaruano

docs/example_config_files/Basic_example_vuegen_demo_notebook_config.yaml

@@ -11,57 +11,57 @@ sections:
     description: Optional description for section.
     components:
     - title: Top Species Plot By Biome Plotly
-      file_path: ./docs/example_data/Basic_example_vuegen_demo_notebook/1_Plots/1_Interactive_plots/1_top_species_plot_by_biome_plotly.json
+      file_path: example_data/Basic_example_vuegen_demo_notebook/1_Plots/1_Interactive_plots/1_top_species_plot_by_biome_plotly.json
       description: ''
       caption: ''
       component_type: plot
       plot_type: plotly
     - title: Multiline Plot Altair
-      file_path: ./docs/example_data/Basic_example_vuegen_demo_notebook/1_Plots/1_Interactive_plots/2_multiline_plot_altair.json
+      file_path: example_data/Basic_example_vuegen_demo_notebook/1_Plots/1_Interactive_plots/2_multiline_plot_altair.json
       description: ''
       caption: ''
       component_type: plot
       plot_type: altair
     - title: Pie Plot Countries Plotly
-      file_path: ./docs/example_data/Basic_example_vuegen_demo_notebook/1_Plots/1_Interactive_plots/3_pie_plot_countries_plotly.json
+      file_path: example_data/Basic_example_vuegen_demo_notebook/1_Plots/1_Interactive_plots/3_pie_plot_countries_plotly.json
       description: ''
       caption: ''
       component_type: plot
       plot_type: plotly
     - title: Pie Plots Biomes Plotly
-      file_path: ./docs/example_data/Basic_example_vuegen_demo_notebook/1_Plots/1_Interactive_plots/4_pie_plots_biomes_plotly.json
+      file_path: example_data/Basic_example_vuegen_demo_notebook/1_Plots/1_Interactive_plots/4_pie_plots_biomes_plotly.json
       description: ''
       caption: ''
       component_type: plot
       plot_type: plotly
     - title: Saline Metagenomics Samples Map Altair
-      file_path: ./docs/example_data/Basic_example_vuegen_demo_notebook/1_Plots/1_Interactive_plots/5_saline_metagenomics_samples_map_altair.json
+      file_path: example_data/Basic_example_vuegen_demo_notebook/1_Plots/1_Interactive_plots/5_saline_metagenomics_samples_map_altair.json
       description: ''
       caption: ''
       component_type: plot
       plot_type: altair
     - title: Description
-      file_path: ./docs/example_data/Basic_example_vuegen_demo_notebook/1_Plots/1_Interactive_plots/description.md
+      file_path: example_data/Basic_example_vuegen_demo_notebook/1_Plots/1_Interactive_plots/description.md
       description: ''
       caption: ''
       component_type: markdown
   - title: Static Plots
     description: ''
     components:
     - title: Number Samples Per Study
-      file_path: ./docs/example_data/Basic_example_vuegen_demo_notebook/1_Plots/2_Static_plots/1_number_samples_per_study.png
+      file_path: example_data/Basic_example_vuegen_demo_notebook/1_Plots/2_Static_plots/1_number_samples_per_study.png
       description: ''
       caption: ''
       component_type: plot
       plot_type: static
     - title: Animal Metagenomics Samples Map
-      file_path: ./docs/example_data/Basic_example_vuegen_demo_notebook/1_Plots/2_Static_plots/2_animal_metagenomics_samples_map.png
+      file_path: example_data/Basic_example_vuegen_demo_notebook/1_Plots/2_Static_plots/2_animal_metagenomics_samples_map.png
       description: ''
       caption: ''
       component_type: plot
       plot_type: static
     - title: Alpha Diversity Host Associated Samples
-      file_path: ./docs/example_data/Basic_example_vuegen_demo_notebook/1_Plots/2_Static_plots/3_alpha_diversity_host_associated_samples.png
+      file_path: example_data/Basic_example_vuegen_demo_notebook/1_Plots/2_Static_plots/3_alpha_diversity_host_associated_samples.png
       description: ''
       caption: ''
       component_type: plot
@@ -82,27 +82,27 @@ sections:
     description: This subsection contains example dataframes.
     components:
     - title: Phyla Correlation Network Csv
-      file_path: ./docs/example_data/Basic_example_vuegen_demo_notebook/2_Dataframes/1_All_formats/1_phyla_correlation_network_csv.csv
+      file_path: example_data/Basic_example_vuegen_demo_notebook/2_Dataframes/1_All_formats/1_phyla_correlation_network_csv.csv
       description: ''
       caption: ''
       component_type: dataframe
       file_format: csv
       delimiter: ','
     - title: Abundance Table Example Xls
-      file_path: ./docs/example_data/Basic_example_vuegen_demo_notebook/2_Dataframes/1_All_formats/2_abundance_table_example_xls.xls
+      file_path: example_data/Basic_example_vuegen_demo_notebook/2_Dataframes/1_All_formats/2_abundance_table_example_xls.xls
       description: ''
       caption: ''
       component_type: dataframe
       file_format: xls
     - title: Sample Info Example Txt
-      file_path: ./docs/example_data/Basic_example_vuegen_demo_notebook/2_Dataframes/1_All_formats/3_sample_info_example_txt.txt
+      file_path: example_data/Basic_example_vuegen_demo_notebook/2_Dataframes/1_All_formats/3_sample_info_example_txt.txt
       description: ''
       caption: ''
       component_type: dataframe
       file_format: txt
       delimiter: \t
     - title: Sample Info Example Parquet
-      file_path: ./docs/example_data/Basic_example_vuegen_demo_notebook/2_Dataframes/1_All_formats/4_sample_info_example_parquet.parquet
+      file_path: example_data/Basic_example_vuegen_demo_notebook/2_Dataframes/1_All_formats/4_sample_info_example_parquet.parquet
       description: ''
       caption: ''
       component_type: dataframe
@@ -114,21 +114,21 @@ sections:
     description: Optional description for subsection
     components:
     - title: Man Example
-      file_path: ./docs/example_data/Basic_example_vuegen_demo_notebook/3_Networks/1_Interactive_networks/1_man_example.graphml
+      file_path: example_data/Basic_example_vuegen_demo_notebook/3_Networks/1_Interactive_networks/1_man_example.graphml
       description: ''
       caption: ''
       component_type: plot
       plot_type: interactive_network
     - title: Description
-      file_path: ./docs/example_data/Basic_example_vuegen_demo_notebook/3_Networks/1_Interactive_networks/description.md
+      file_path: example_data/Basic_example_vuegen_demo_notebook/3_Networks/1_Interactive_networks/description.md
       description: ''
       caption: ''
       component_type: markdown
   - title: Static Networks
     description: ''
     components:
     - title: Phyla Correlation Network
-      file_path: ./docs/example_data/Basic_example_vuegen_demo_notebook/3_Networks/2_Static_networks/1_phyla_correlation_network.png
+      file_path: example_data/Basic_example_vuegen_demo_notebook/3_Networks/2_Static_networks/1_phyla_correlation_network.png
       description: ''
       caption: ''
       component_type: plot
@@ -140,18 +140,18 @@ sections:
     description: ''
     components:
     - title: Plot
-      file_path: ./docs/example_data/Basic_example_vuegen_demo_notebook/4_Html/1_All_html/1_plot.html
+      file_path: example_data/Basic_example_vuegen_demo_notebook/4_Html/1_All_html/1_plot.html
       description: ''
       caption: ''
       component_type: html
     - title: Ckg Network
-      file_path: ./docs/example_data/Basic_example_vuegen_demo_notebook/4_Html/1_All_html/2_ckg_network.html
+      file_path: example_data/Basic_example_vuegen_demo_notebook/4_Html/1_All_html/2_ckg_network.html
       description: ''
       caption: ''
       component_type: plot
       plot_type: interactive_network
     - title: Multiqc Report
-      file_path: ./docs/example_data/Basic_example_vuegen_demo_notebook/4_Html/1_All_html/3_multiqc_report.html
+      file_path: example_data/Basic_example_vuegen_demo_notebook/4_Html/1_All_html/3_multiqc_report.html
       description: ''
       caption: ''
       component_type: html
@@ -162,7 +162,7 @@ sections:
     description: ''
     components:
     - title: Readme
-      file_path: ./docs/example_data/Basic_example_vuegen_demo_notebook/5_Markdown/1_All_markdown/README.md
+      file_path: example_data/Basic_example_vuegen_demo_notebook/5_Markdown/1_All_markdown/README.md
       description: ''
       caption: ''
       component_type: markdown

docs/example_config_files/Earth_microbiome_vuegen_demo_notebook_config.yaml

@@ -22,26 +22,26 @@ sections:
     description: ''
     components:
     - title: Metadata Random Subset
-      file_path: ./docs/example_data/Earth_microbiome_vuegen_demo_notebook/1_Exploratory_data_analysis/1_sample_exploration/1_metadata_random_subset.csv
+      file_path: example_data/Earth_microbiome_vuegen_demo_notebook/1_Exploratory_data_analysis/1_sample_exploration/1_metadata_random_subset.csv
       description: ''
       caption: ''
       component_type: DATAFRAME
       file_format: CSV
       delimiter: ','
     - title: Animal Samples Map
-      file_path: ./docs/example_data/Earth_microbiome_vuegen_demo_notebook/1_Exploratory_data_analysis/1_sample_exploration/2_animal_samples_map.png
+      file_path: example_data/Earth_microbiome_vuegen_demo_notebook/1_Exploratory_data_analysis/1_sample_exploration/2_animal_samples_map.png
       description: ''
       caption: ''
       component_type: PLOT
       plot_type: STATIC
     - title: Plant Samples Map
-      file_path: ./docs/example_data/Earth_microbiome_vuegen_demo_notebook/1_Exploratory_data_analysis/1_sample_exploration/3_plant_samples_map.json
+      file_path: example_data/Earth_microbiome_vuegen_demo_notebook/1_Exploratory_data_analysis/1_sample_exploration/3_plant_samples_map.json
       description: ''
       caption: ''
       component_type: PLOT
       plot_type: PLOTLY
     - title: Saline Samples Map
-      file_path: ./docs/example_data/Earth_microbiome_vuegen_demo_notebook/1_Exploratory_data_analysis/1_sample_exploration/4_saline_samples_map.json
+      file_path: example_data/Earth_microbiome_vuegen_demo_notebook/1_Exploratory_data_analysis/1_sample_exploration/4_saline_samples_map.json
       description: ''
       caption: ''
       component_type: PLOT
@@ -62,13 +62,13 @@ sections:
       dataset.
     components:
     - title: Alpha Diversity Host Associated Samples
-      file_path: ./docs/example_data/Earth_microbiome_vuegen_demo_notebook/2_Metagenomics/1_alpha_diversity/1_alpha_diversity_host_associated_samples.png
+      file_path: example_data/Earth_microbiome_vuegen_demo_notebook/2_Metagenomics/1_alpha_diversity/1_alpha_diversity_host_associated_samples.png
       description: ''
       caption: ''
       component_type: PLOT
       plot_type: STATIC
     - title: Alpha Diversity Free Living Samples
-      file_path: ./docs/example_data/Earth_microbiome_vuegen_demo_notebook/2_Metagenomics/1_alpha_diversity/2_alpha_diversity_free_living_samples.json
+      file_path: example_data/Earth_microbiome_vuegen_demo_notebook/2_Metagenomics/1_alpha_diversity/2_alpha_diversity_free_living_samples.json
       description: ''
       caption: ''
       component_type: PLOT
@@ -77,13 +77,13 @@ sections:
     description: ''
     components:
     - title: Average Copy Number Emp Ontology Level2
-      file_path: ./docs/example_data/Earth_microbiome_vuegen_demo_notebook/2_Metagenomics/2_average_copy_number/1_average_copy_number_emp_ontology_level2.png
+      file_path: example_data/Earth_microbiome_vuegen_demo_notebook/2_Metagenomics/2_average_copy_number/1_average_copy_number_emp_ontology_level2.png
       description: ''
       caption: ''
       component_type: PLOT
       plot_type: STATIC
     - title: Average Copy Number Emp Ontology Level3
-      file_path: ./docs/example_data/Earth_microbiome_vuegen_demo_notebook/2_Metagenomics/2_average_copy_number/2_average_copy_number_emp_ontology_level3.json
+      file_path: example_data/Earth_microbiome_vuegen_demo_notebook/2_Metagenomics/2_average_copy_number/2_average_copy_number_emp_ontology_level3.json
       description: ''
       caption: ''
       component_type: PLOT
@@ -92,32 +92,32 @@ sections:
     description: ''
     components:
     - title: Nestedness Random Subset
-      file_path: ./docs/example_data/Earth_microbiome_vuegen_demo_notebook/2_Metagenomics/3_nestedness/1_nestedness_random_subset.csv
+      file_path: example_data/Earth_microbiome_vuegen_demo_notebook/2_Metagenomics/3_nestedness/1_nestedness_random_subset.csv
       description: ''
       caption: ''
       component_type: DATAFRAME
       file_format: CSV
       delimiter: ','
     - title: All Samples
-      file_path: ./docs/example_data/Earth_microbiome_vuegen_demo_notebook/2_Metagenomics/3_nestedness/2_all_samples.json
+      file_path: example_data/Earth_microbiome_vuegen_demo_notebook/2_Metagenomics/3_nestedness/2_all_samples.json
       description: ''
       caption: ''
       component_type: PLOT
       plot_type: PLOTLY
     - title: Plant Samples
-      file_path: ./docs/example_data/Earth_microbiome_vuegen_demo_notebook/2_Metagenomics/3_nestedness/3_plant_samples.json
+      file_path: example_data/Earth_microbiome_vuegen_demo_notebook/2_Metagenomics/3_nestedness/3_plant_samples.json
       description: ''
       caption: ''
       component_type: PLOT
       plot_type: PLOTLY
     - title: Animal Samples
-      file_path: ./docs/example_data/Earth_microbiome_vuegen_demo_notebook/2_Metagenomics/3_nestedness/4_animal_samples.png
+      file_path: example_data/Earth_microbiome_vuegen_demo_notebook/2_Metagenomics/3_nestedness/4_animal_samples.png
       description: ''
       caption: ''
       component_type: PLOT
       plot_type: STATIC
     - title: Non Saline Samples
-      file_path: ./docs/example_data/Earth_microbiome_vuegen_demo_notebook/2_Metagenomics/3_nestedness/5_non_saline_samples.png
+      file_path: example_data/Earth_microbiome_vuegen_demo_notebook/2_Metagenomics/3_nestedness/5_non_saline_samples.png
       description: ''
       caption: ''
       component_type: PLOT
@@ -139,21 +139,21 @@ sections:
     description: ''
     components:
     - title: Phyla Counts Subset
-      file_path: ./docs/example_data/Earth_microbiome_vuegen_demo_notebook/3_Network_analysis/1_phyla_association_networks/1_phyla_counts_subset.csv
+      file_path: example_data/Earth_microbiome_vuegen_demo_notebook/3_Network_analysis/1_phyla_association_networks/1_phyla_counts_subset.csv
       description: ''
       caption: ''
       component_type: DATAFRAME
       file_format: CSV
       delimiter: ','
     - title: Phyla Correlation Network With 0.5 Threshold Edgelist
-      file_path: ./docs/example_data/Earth_microbiome_vuegen_demo_notebook/3_Network_analysis/1_phyla_association_networks/2_phyla_correlation_network_with_0.5_threshold_edgelist.csv
+      file_path: example_data/Earth_microbiome_vuegen_demo_notebook/3_Network_analysis/1_phyla_association_networks/2_phyla_correlation_network_with_0.5_threshold_edgelist.csv
       description: ''
       caption: ''
       component_type: PLOT
       plot_type: INTERACTIVE_NETWORK
       csv_network_format: EDGELIST
     - title: Phyla Correlation Network With 0.5 Threshold
-      file_path: ./docs/example_data/Earth_microbiome_vuegen_demo_notebook/3_Network_analysis/1_phyla_association_networks/3_phyla_correlation_network_with_0.5_threshold.png
+      file_path: example_data/Earth_microbiome_vuegen_demo_notebook/3_Network_analysis/1_phyla_association_networks/3_phyla_correlation_network_with_0.5_threshold.png
       description: ''
       caption: ''
       component_type: PLOT