develop index_plasmids functions #33
Description
Now abstract_designs can be 1 componentDefinitions, classical TU/gene, combinatorialDerivation 3 TUS with different FP, and ModuleDefinition can be a design with many backbones<5.
From collections
get strains, plasmids, implementations
process implementations to get strains or plasmids depending on the impementation
process strains, this extracts the plasmid, and connects to proper strain
process plasmids, this makes your MoClo plasmid, and marks strain as None
all the plamids internal representations should be unique (or a set)
Extract antibiotic resistance from the definition.
search a plasmid by role engineered_plasmid
then search for a component within the plasmid with role plasmid_verctor, this is the backbone
then search for a component within the backbone with role Antibiotic Resistance(http://purl.obolibrary.org/obo/NCIT_C17449)