some cleanup

Author: Alexander Ororbia

README.md

@@ -32,7 +32,7 @@ ngc-learn requires:
 1) Python (>=3.10)
 2) NumPy (>=1.22.0)
 3) SciPy (>=1.7.0)
-4) ngcsimlib (>=1.0.0), (visit official page <a href="https://github.com/NACLab/ngc-sim-lib">here</a>)
+4) ngcsimlib (>=2.0.0), (visit official page <a href="https://github.com/NACLab/ngc-sim-lib">here</a>)
 5) JAX (>=0.4.28) (to enable GPU use, make sure to install one of the CUDA variants)
 <!--
 5) scikit-learn (>=1.3.1) if using `ngclearn.utils.density`
@@ -42,7 +42,7 @@ ngc-learn requires:
 -->
 
 ---
-ngc-learn 2.0.0 and later require Python 3.10 or newer as well as ngcsimlib >=1.0.0.
+ngc-learn 3.0.0 and later require Python 3.10 or newer as well as ngcsimlib >=2.0.0.
 ngc-learn's plotting capabilities (routines within `ngclearn.utils.viz`) require
 Matplotlib (>=3.8.0) and imageio (>=2.31.5) and both plotting and density estimation
 tools (routines within ``ngclearn.utils.density``) will require Scikit-learn (>=0.24.2).
@@ -75,7 +75,7 @@ Python 3.11.4 (main, MONTH  DAY YEAR, TIME) [GCC XX.X.X] on linux
 Type "help", "copyright", "credits" or "license" for more information.
 >>> import ngclearn
 >>> ngclearn.__version__
-'2.0.0'
+'3.0.0'
 ```
 
 <i>Note:</i> For access to the previous Tensorflow-2 version of ngc-learn (of
@@ -122,7 +122,7 @@ $ python install -e .
 </pre>
 
 **Version:**<br>
-2.0.2 <!--1.2.3-Beta--> <!-- -Alpha -->
+3.0.0 <!--1.2.3-Beta--> <!-- -Alpha -->
 
 Author:
 Alexander G. Ororbia II<br>

docs/source/ngclearn.commands.rst

@@ -28,6 +28,14 @@ ngclearn.components.neurons.graded.laplacianErrorCell module
    :undoc-members:
    :show-inheritance:
 
+ngclearn.components.neurons.graded.leakyNoiseCell module
+--------------------------------------------------------
+
+.. automodule:: ngclearn.components.neurons.graded.leakyNoiseCell
+   :members:
+   :undoc-members:
+   :show-inheritance:
+
 ngclearn.components.neurons.graded.rateCell module
 --------------------------------------------------
 

docs/source/ngclearn.components.lava.neurons.rst

@@ -8,7 +8,6 @@ Subpackages
    :maxdepth: 4
 
    ngclearn.components.input_encoders
-   ngclearn.components.lava
    ngclearn.components.neurons
    ngclearn.components.other
    ngclearn.components.synapses

docs/source/ngclearn.components.lava.rst

@@ -7,7 +7,6 @@ Subpackages
 .. toctree::
    :maxdepth: 4
 
-   ngclearn.commands
    ngclearn.components
    ngclearn.modules
    ngclearn.operations

docs/source/ngclearn.components.lava.synapses.rst

@@ -16,6 +16,14 @@ Subpackages
 Submodules
 ----------
 
+ngclearn.utils.JaxProcessesMixin module
+---------------------------------------
+
+.. automodule:: ngclearn.utils.JaxProcessesMixin
+   :members:
+   :undoc-members:
+   :show-inheritance:
+
 ngclearn.utils.data\_loader module
 ----------------------------------
 
@@ -24,18 +32,18 @@ ngclearn.utils.data\_loader module
    :undoc-members:
    :show-inheritance:
 
-ngclearn.utils.io\_utils module
--------------------------------
+ngclearn.utils.distribution\_generator module
+---------------------------------------------
 
-.. automodule:: ngclearn.utils.io_utils
+.. automodule:: ngclearn.utils.distribution_generator
    :members:
    :undoc-members:
    :show-inheritance:
 
-ngclearn.utils.jaxProcess module
---------------------------------
+ngclearn.utils.io\_utils module
+-------------------------------
 
-.. automodule:: ngclearn.utils.jaxProcess
+.. automodule:: ngclearn.utils.io_utils
    :members:
    :undoc-members:
    :show-inheritance:
@@ -56,6 +64,14 @@ ngclearn.utils.model\_utils module
    :undoc-members:
    :show-inheritance:
 
+ngclearn.utils.patch module
+---------------------------
+
+.. automodule:: ngclearn.utils.patch
+   :members:
+   :undoc-members:
+   :show-inheritance:
+
 ngclearn.utils.patch\_utils module
 ----------------------------------