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posts/2026-02-12-working-with-R-packages/index.qmd

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title: "Working with R packages"
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author:
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- "Dania Machlab"
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- "Mahesh Binzer-Panchal"
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date: "2026-02-12"
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date-modified: last-modified
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categories: ["R", "R packages", "Version controlling with Bioconductor releases"]
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## Other mentions
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Additional resources to check for managing and using R packages are [renv](https://rstudio.github.io/renv/articles/renv.html), [pixi](https://pixi.prefix.dev/latest/), Bioconductor Docker [containers](https://bioconductor.org/help/docker/), and [Seqera's Wave](https://seqera.io/wave/). It is worth keeping in mind that some of these do not allow for specifying the Bioconductor release version when installing packages and that [Bioconda](https://bioconda.github.io) can be a bit behind in terms of package versions, with some of the most recent versions missing.
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Additional resources to check for managing and using R packages are:
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- [pixi](https://pixi.prefix.dev/latest/)
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- [Bioconductor Docker containers](https://bioconductor.org/help/docker/)
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- [Seqera's Wave](https://seqera.io/wave/)
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It is worth keeping in mind that some of these do not allow for specifying the Bioconductor release version when installing packages and that [Bioconda](https://bioconda.github.io) can be a bit behind in terms of package versions, with some of the most recent versions missing.

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