ParallelIO/.github/workflows/netcdf_hdf5_pnetcdf_ncint_mpich_asan.yml at main · NCAR/ParallelIO · GitHub

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name: netcdf_hdf5_pnetcdf_ncint_mpich_asan
on:
  push:
    branches: [ maintodo ]
  pull_request:
    branches: [ maintodo ]

jobs:
  build:

    runs-on: ubuntu-latest

    env:
      # Note issue https://github.com/NCAR/ParallelIO/issues/1889 netcdf integration only currently works with netcdf-c 4.7.4
      NETCDF_C_VERSION: 4.7.4
      NETCDF_F_VERSION: 4.5.4
      PNETCDF_VERSION: checkpoint.1.12.3
      MPICH_VERSION: v4.0.3
      HDF5_VERSION: hdf5_1_12_2
      FCFLAGS: "-fallow-argument-mismatch"
      FFLAGS: "-fallow-argument-mismatch"
    steps:
    - uses: actions/checkout@v4
    - name: Installs
      run: |
        sudo apt-get install doxygen graphviz wget gfortran libjpeg-dev libz-dev
    - name: cache-mpich
      id: cache-mpich
      uses: actions/cache@v4
      with:
        path: ~/mpich
        key: mpich-${{ runner.os }}-${{ env.MPICH_VERSION }}

    - name: build-mpich
      if: steps.cache-mpich.outputs.cache-hit != 'true'
      uses: ./.github/actions/buildmpich
      with:
        install_prefix: $HOME/mpich
        mpich_version: ${{ env.MPICH_VERSION }}

    - name: cache-hdf5
      id: cache-hdf5
      uses: actions/cache@v4
      with:
        path: ~/hdf5
        key: hdf5-${{ runner.os }}-${{ env.HDF5_VERSION }}-mpich-${{ env.MPICH_VERSION }}

    - name: build-hdf5
      if: steps.cache-hdf5.outputs.cache-hit != 'true'
      uses: ./.github/actions/buildhdf5
      with:
        install_prefix: $HOME/hdf5
        enable_parallel: True
        hdf5_version: ${{ env.HDF5_VERSION }}
        mpi_path: $HOME/mpich
    - name: cache-netcdf-c
      id: cache-netcdf-c
      uses: actions/cache@v4
      with:
        path: ~/netcdf-c
        key: netcdf-c-${{ runner.os }}-${{ env.NETCDF_C_VERSION }}-mpich-${{ env.MPICH_VERSION }}-hdf5-${{ env.HDF5_VERSION }}

    - name: build-netcdf-c
      if: steps.cache-netcdf-c.outputs.cache-hit != 'true'
      uses: ./.github/actions/buildnetcdf
      with:
        netcdf_version: ${{ env.NETCDF_VERSION }}
        install_prefix: $HOME/netcdf-c

    - name: cache-netcdf-fortran
      id: cache-netcdf-fortran
      uses: actions/cache@v4
      with:
        path: ~/netcdf-fortran
        key: netcdf-fortran-${{ runner.os }}-${{ env.NETCDF_F_VERSION }}-mpich-${{ env.MPICH_VERSION }}-hdf5-${{ env.HDF5_VERSION_MAJOR }}.${{ env.HDF5_VERSION_PATCH }}

    - name: Build NetCDF Fortran
      if: steps.cache-netcdf-fortran.outputs.cache-hit != 'true'
      uses: ./.github/actions/buildnetcdff
      with:
        netcdf_fortran_version: ${{ env.NETCDF_FORTRAN_VERSION }}
        install_prefix: $HOME/netcdf-fortran
        netcdf_c_path: $HOME/netcdf-c

    - name: cache-pnetcdf
      id: cache-pnetcdf
      uses: actions/cache@v4
      with:
        path: ~/pnetcdf
        key: pnetcdf-${{ runner.os }}-${{ env.PNETCDF_VERSION }}-mpich-${{ env.MPICH_VERSION }}

    - name: Build PNetCDF
      if: steps.cache-pnetcdf.outputs.cache-hit != 'true'
      uses: ./.github/actions/buildpnetcdf
      with:
        pnetcdf_version: ${{ env.PNETCDF_VERSION }}
        install_prefix: $HOME/pnetcdf
    - name: prep for build
      run: |
        export LD_LIBRARY_PATH="/home/runner/netcdf-c/lib:/home/runner/mpich/lib:/home/runner/hdf5/lib:/home/runner/netcdf-fortran/lib:/home/runner/pnetcdf/lib:$LD_LIBRARY_PATH"
        export ASAN_OPTIONS="detect_odr_violation=0"
        export CC=/home/runner/mpich/bin/mpicc
        export FC=/home/runner/mpich/bin/mpifort
        export PATH=/home/runner/mpich/bin:$PATH
        printenv >> $GITHUB_ENV
    - name: cmake build
      uses: ./.github/actions/parallelio_cmake
      with:
        parallelio_version: ${{ env.GITHUB_SHA }}
        with_pnetcdf: $HOME/pnetcdf
        with_netcdf: $HOME/netcdf-c
        with_netcdff: $HOME/netcdf-fortran
        enable_fortran: True
        install_prefix: $HOME/parallelio
        extra_cflags: "-g -O0 -fsanitize=address -fno-omit-frame-pointer -static-libasan"
        extra_fflags: " -g -O0 -fsanitize=address -fno-omit-frame-pointer -static-libasan"
        extra_ldflags: " -static-libasan"

    - name: run tests
      run: |
        cd $GITHUB_WORKSPACE/parallelio-src
        make -j check

    - name: autotools build
      run: |
        set -x
        gcc --version
        autoreconf -i
        ./configure --enable-fortran --enable-netcdf-integration
        make -j check