Merge pull request #272 from NCAR/develop

v1.4.0

Author: kafitzgerald

.github/dependabot.yml

@@ -0,0 +1,7 @@
+version: 2
+updates:
+  - package-ecosystem: 'github-actions'
+    directory: '/'
+    schedule:
+      # Check for updates once a week
+      interval: 'weekly'

.github/workflows/ci.yml

@@ -1,56 +1,58 @@
 name: CI
 on:
   push:
+    branches:
+      - main
+      - develop
   pull_request:
   workflow_dispatch:
-  # schedule:
-  #    - cron: '0 0 * * *' # Daily “At 00:00”
+  schedule:
+    - cron: '0 0 * * *' # Daily “At 00:00”
+
+concurrency:
+  group: ${{ github.workflow }}-${{ github.ref }}
+  cancel-in-progress: true
 
 jobs:
   test:
-    # if: |
-    #   github.repository == 'NCAR/wrf-python'
-    name: Python (${{ matrix.python-version }}, ${{ matrix.os }})
+    name: Python ${{ matrix.python-version }}, ${{ matrix.os }}
     runs-on: ${{ matrix.os }}
     defaults:
       run:
         shell: bash -l {0}
-
     strategy:
       fail-fast: false
       matrix:
-        os: [ "ubuntu-latest", "macos-latest"]
-        python-version: [ "3.7", "3.8", "3.9", "3.10" ]
-
+        os: [ "ubuntu-latest", "macos-latest", "macos-14" ]
+        python-version: [ "3.9", "3.10", "3.11", "3.12" ]
     steps:
-      - name: Cancel previous runs
-        uses: styfle/[email protected]
-        with:
-          access_token: ${{ github.token }}
-      - name: Checkout
-        uses: actions/checkout@v2
+      - name: checkout
+        uses: actions/checkout@v4
+      - name: environment setup
+        uses: conda-incubator/setup-miniconda@505e6394dae86d6a5c7fbb6e3fb8938e3e863830 # v3.1.1
         with:
-          token: ${{ github.token }}
-      - name: Conda setup
-        uses: conda-incubator/setup-miniconda@v2
-        with:
-          activate-environment: wrf_python_build
           python-version: ${{ matrix.python-version }}
-          channels: conda-forge, ncar
-      - name: Conda install (Darwin)
-        if: matrix.os == 'macos-latest'
-        run: |
-          conda env update --file build_envs/Darwin.yml --prune
-      - name: Conda install (Linux)
-        if: matrix.os == 'ubuntu-latest'
+          channels: conda-forge
+          environment-file: build_envs/environment.yml
+      - name: build WRF-Python
         run: |
-          conda env update --file build_envs/Linux.yml --prune
-      - name: Build WRF-Python
-        run: |
-          cd build_scripts
-          ./gnu_omp.sh
-          cd ..
-      - name: Run tests
+          python -m pip install build
+          python -m build .
+          python -m pip install dist/wrf*.whl
+      - name: run tests
         run: |
           cd test/ci_tests
           python utests.py
+      - name: check import
+        if: failure()
+        run: |
+          python -m pip show wrf-python
+          python -m pip show --files wrf-python
+          prefix="$(python -m pip show --files wrf-python | grep Location: | cut -f2 -d" ")"
+          echo "Site-packages directory is ${prefix}"
+          cd "${prefix}"
+          installed_files="$(python -m pip show --files wrf-python | grep -v -E -e '^[-a-zA-Z]+:')"
+          ls -l ${installed_files}
+          file ${installed_files}
+          python -vvv -dd -c "import wrf"
+          ldd $(echo ${installed_files} | grep -F -v -e ".py" -e ".dist-info")

.github/workflows/pypi.yaml

@@ -8,19 +8,18 @@ jobs:
     if: github.repository == 'NCAR/wrf-python'
     runs-on: ubuntu-latest
     steps:
-      - uses: actions/checkout@v3
+      - uses: actions/checkout@v4
       - name: Set up Python
-        uses: actions/setup-python@v3
+        uses: actions/setup-python@v5
         with:
-          python-version: '3.x'
+          python-version: '3.10'
       - name: Install dependencies
         run: |
           python -m pip install --upgrade pip
-          python -m pip install setuptools setuptools-scm wheel twine check-manifest
+          python -m pip install build twine
       - name: Build tarball and wheels
         run: |
-          python setup.py sdist bdist_wheel
-          python -m pip wheel . -w dist --no-deps
+          python -m build
       - name: Test the artifacts
         run: |
           python -m twine check dist/*
@@ -29,26 +28,25 @@ jobs:
     if: startsWith(github.ref, 'refs/tags')
     runs-on: ubuntu-latest
     steps:
-      - uses: actions/checkout@v3
+      - uses: actions/checkout@v4
       - name: Set up Python
-        uses: actions/setup-python@v3
+        uses: actions/setup-python@v5
         with:
-          python-version: '3.x'
+          python-version: '3.10'
       - name: Install dependencies
         run: |
           python -m pip install --upgrade pip
-          python -m pip install setuptools setuptools-scm wheel twine check-manifest
+          python -m pip install build twine
       - name: Build tarball and wheels
         run: |
-          python setup.py sdist bdist_wheel
-          python -m pip wheel . -w dist --no-deps
+          python -m build
       - name: Test the artifacts
         run: |
           python -m twine check dist/*
       - name: Publish package to PyPI
-        uses: pypa/gh-action-pypi-publish@v1.5.0
+        uses: pypa/gh-action-pypi-publish@76f52bc884231f62b9a034ebfe128415bbaabdfc # v1.12.4
         with:
           user: __token__
           password: ${{ secrets.PYPI_WRF_PYTHON }}
           skip_existing: true
-          verbose: true
+          verbose: true

.readthedocs.yml

@@ -0,0 +1,21 @@
+# .readthedocs.yml
+# Read the Docs configuration file
+# See https://docs.readthedocs.io/en/stable/config-file/v2.html for details
+
+# Required
+version: 2
+
+build:
+  os: "ubuntu-20.04"
+  tools:
+    python: "mambaforge-4.10"
+  jobs:
+    post_create_environment:
+      - python -m pip install --no-cache-dir --no-deps .
+
+# Build documentation in the docs/ directory with Sphinx
+sphinx:
+  configuration: doc/source/conf.py
+
+conda:
+  environment: build_envs/environment.yml

CITATION.cff

@@ -0,0 +1,7 @@
+cff-version: 1.2.0
+message: "If you use this software, please cite it as below."
+authors:
+  - given-names: "Visualization & Analysis Systems Technologies"
+title: "Geoscience Community Analysis Toolkit: WRF-Python"
+doi: 10.5065/D6W094P1
+url: "https://github.com/NCAR/wrf-python"