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NCBI_PowerTools_Docker

A Docker image with NCBI and other popular Bioinformatics tools.

Please note: this is work in progress

Examples of usage

  1. Check BLAST version docker run --rm -it ncbihackathons/bioinfo_power_tools blastn -version

TODO: Please add other real-world examples.

Want to help?

Please see the TODO file.

Maintainer's notes

A Makefile is provided to conveniently maintain this docker image. In the commands below, the value of $X represents the version of this docker image to build.

  • make build VERSION=$X: builds the docker image
  • make publish VERSION=$X: publishes the image to Docker Hub. Assumes docker login was run ahead of time.
  • make check: performs a sanity check on the most recently built image

Credits

  • Ben Busby
  • Ryan Connor
  • Alex Efremov
  • Christiam Camacho
  • Those who built tools that are not from NCBI
  • Those who built tools that are from NCBI

References

See also https://github.com/ncbi/docker.