Migrating to Bootstrap 5 #39
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| name: pull data from MDEB data hub | ||
| on: | ||
| push: | ||
| branches: | ||
| - main2 | ||
| pull_request: | ||
| branches: | ||
| - main2 | ||
| #schedule: | ||
| # uses UTC/GMT time (+ 5 hrs) | ||
| ## put on HOLD temporarily | ||
| #- cron: "0 17 * * 3" # Every Wednesday at 1200 hrs = 1700 UTC | ||
| jobs: | ||
| build: | ||
| runs-on: ubuntu-latest | ||
| env: | ||
| GITHUB_PAT: ${{ secrets.GH_RELEASE }} | ||
| R_REMOTES_NO_ERRORS_FROM_WARNINGS: false | ||
| steps: | ||
| - name: Checkout repo | ||
| uses: actions/checkout@v4 | ||
| with: | ||
| fetch-depth: 0 | ||
| - name: set up pandoc | ||
| uses: r-lib/actions/setup-pandoc@v2 | ||
| - name: Install command line packages | ||
| run: | | ||
| sudo apt update | ||
| sudo apt-get install libcurl4-openssl-dev libgit2-dev | ||
| # sudo apt-get install libgdal-dev libcurl4-gnutls-dev libgit2-dev libudunits2-dev libharfbuzz-dev libfribidi-dev | ||
| shell: bash | ||
| - name: Set up R | ||
| uses: r-lib/actions/setup-r@v2 | ||
| with: | ||
| r-version: '4.2.0' | ||
| - name: Install packages | ||
| run: | | ||
| install.packages(c("remotes","jsonlite", "dplyr", "httr2", "here", "sf","rmarkdown")) | ||
| remotes::install_github("NEFSC/NEFSC-Spatial") | ||
| shell: Rscript {0} | ||
| - name: Pull MDEB data and save to repo | ||
| run: | | ||
| options(timeout = 60 * 60 * 6) | ||
| source(here::here("data-raw/get_mdeb_for_package.R")) | ||
| get_mdeb_for_package() | ||
| shell: Rscript {0} | ||
| - name: Make Comparisons for commit | ||
| # check for new data added or data omitted. Not concerned with data fixes | ||
| # update NEWS.md, DESCRIPTION with version/notes | ||
| # increments package version in description | ||
| run: | | ||
| options(timeout = 60 * 60 * 6) | ||
| source(here::here("data-raw/compare_data.r")) | ||
| source(here::here("data-raw/update_description.R")) | ||
| source(here::here("data-raw/update_news.R")) | ||
| diffs <- compare_data() | ||
| version <- update_description(diffs, digit=3) | ||
| update_news(version, diffs) | ||
| rmarkdown::render(here::here("data-raw/sendAsEmail.Rmd"), | ||
| params = diffs) | ||
| saveRDS(version,here::here("data-raw/version.rds")) | ||
| shell: Rscript {0} | ||
| - name: render readme.rmd | ||
| run: | | ||
| options(timeout = 60 * 60 * 6) | ||
| rmarkdown::render(here::here("README.Rmd")) | ||
| shell: Rscript {0} | ||
| # Send email indicating if anything has changed | ||
| # - name: Send email | ||
| # uses: dawidd6/action-send-mail@v3 | ||
| # | ||
| # with: | ||
| # server_address: smtp.gmail.com | ||
| # server_port: 465 | ||
| # | ||
| # username: ${{ secrets.MAIL_USERNAME }} | ||
| # password: ${{ secrets.MAIL_PASSWORD }} | ||
| # | ||
| # subject: Github Actions job result | ||
| # to: andrew.beet@noaa.gov | ||
| # | ||
| # from: NEFSCspatial GitHub | ||
| # | ||
| # #body: file://${{github.workspace}}/data-raw/datapull.txt | ||
| # | ||
| # html_body: file://${{github.workspace}}/data-raw/sendAsEmail.html | ||
| # | ||
| # #attachments: ./data-raw/sendAsEmail.html | ||
| # | ||
| # - name: commit data files | ||
| # run: | | ||
| # git config user.name github-actions | ||
| # git config user.email github-actions@github.com | ||
| # git add data/* | ||
| # git add README.md | ||
| # git add NEWS.md | ||
| # git add DESCRIPTION | ||
| # git commit -m "automated mdeb pull from update_mdeb_data yml" | ||
| # git push | ||
| # | ||
| # - name: create gh-release | ||
| # run: | | ||
| # version <- readRDS(here::here("data-raw/version.rds")) | ||
| # if(!is.null(version)){ | ||
| # usethis::use_github_release(publish = TRUE) | ||
| # } | ||
| # shell: Rscript {0} | ||
