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test_convert_to_flat_json.py
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549 lines (428 loc) · 23 KB
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import json
import unittest
from copy import deepcopy
from unittest.mock import patch, Mock
from moto import mock_dynamodb, mock_sqs
from boto3 import resource as boto3_resource
from tests.utils_for_converter_tests import ValuesForTests, ErrorValuesForTests
from SchemaParser import SchemaParser
from Converter import Converter
from ConversionChecker import ConversionChecker
from common.mappings import ActionFlag, Operation, EventName
import ExceptionMessages
MOCK_ENV_VARS = {
"AWS_SQS_QUEUE_URL": "https://sqs.eu-west-2.amazonaws.com/123456789012/test-queue",
"DELTA_TABLE_NAME": "immunisation-batch-internal-dev-audit-test-table",
"SOURCE": "test-source",
}
request_json_data = ValuesForTests.json_data
with patch.dict("os.environ", MOCK_ENV_VARS):
from delta import handler, Converter
@patch.dict("os.environ", MOCK_ENV_VARS, clear=True)
@mock_dynamodb
@mock_sqs
class TestConvertToFlatJson(unittest.TestCase):
maxDiff = None
def setUp(self):
"""Set up mock DynamoDB table."""
self.dynamodb_resource = boto3_resource("dynamodb", "eu-west-2")
self.table = self.dynamodb_resource.create_table(
TableName="immunisation-batch-internal-dev-audit-test-table",
KeySchema=[
{"AttributeName": "PK", "KeyType": "HASH"},
],
AttributeDefinitions=[
{"AttributeName": "PK", "AttributeType": "S"},
{"AttributeName": "Operation", "AttributeType": "S"},
{"AttributeName": "IdentifierPK", "AttributeType": "S"},
{"AttributeName": "SupplierSystem", "AttributeType": "S"},
],
ProvisionedThroughput={"ReadCapacityUnits": 5, "WriteCapacityUnits": 5},
GlobalSecondaryIndexes=[
{
"IndexName": "IdentifierGSI",
"KeySchema": [{"AttributeName": "IdentifierPK", "KeyType": "HASH"}],
"Projection": {"ProjectionType": "ALL"},
"ProvisionedThroughput": {"ReadCapacityUnits": 5, "WriteCapacityUnits": 5},
},
{
"IndexName": "PatientGSI",
"KeySchema": [
{"AttributeName": "Operation", "KeyType": "HASH"},
{"AttributeName": "SupplierSystem", "KeyType": "RANGE"},
],
"Projection": {"ProjectionType": "ALL"},
"ProvisionedThroughput": {"ReadCapacityUnits": 5, "WriteCapacityUnits": 5},
},
],
)
self.logger_info_patcher = patch("logging.Logger.info")
self.mock_logger_info = self.logger_info_patcher.start()
self.logger_exception_patcher = patch("logging.Logger.exception")
self.mock_logger_exception = self.logger_exception_patcher.start()
self.firehose_logger_patcher = patch("delta.firehose_logger")
self.mock_firehose_logger = self.firehose_logger_patcher.start()
def tearDown(self):
self.logger_exception_patcher.stop()
self.logger_info_patcher.stop()
self.mock_firehose_logger.stop()
@staticmethod
def get_event(event_name=EventName.CREATE, operation="operation", supplier="EMIS"):
"""Returns test event data."""
return ValuesForTests.get_event(event_name, operation, supplier)
def assert_dynamodb_record(self, operation_flag, action_flag, items, expected_values, expected_imms, response):
"""
Asserts that a record with the expected structure exists in DynamoDB.
Ignores dynamically generated fields like PK, DateTimeStamp, and ExpiresAt.
Ensures that the 'Imms' field matches exactly.
"""
self.assertTrue(response)
filtered_items = [
{k: v for k, v in item.items() if k not in ["PK", "DateTimeStamp", "ExpiresAt"]}
for item in items
if item.get("Operation") == operation_flag
and item.get("Imms", {}).get("ACTION_FLAG") == action_flag
]
self.assertGreater(len(filtered_items), 0, f"No matching item found for {operation_flag}")
imms_data = filtered_items[0]["Imms"]
self.assertIsInstance(imms_data, dict)
self.assertGreater(len(imms_data), 0)
# Check Imms JSON structure matches exactly
self.assertEqual(imms_data, expected_imms, "Imms data does not match expected JSON structure")
for key, expected_value in expected_values.items():
self.assertIn(key, filtered_items[0], f"{key} is missing")
self.assertEqual(filtered_items[0][key], expected_value, f"{key} mismatch")
def test_fhir_converter_json_direct_data(self):
"""it should convert fhir json data to flat json"""
json_data = json.dumps(ValuesForTests.json_data)
FHIRConverter = Converter(json_data)
FlatFile = FHIRConverter.runConversion(ValuesForTests.json_data, False, True)
flatJSON = json.dumps(FlatFile)
expected_imms_value = deepcopy(ValuesForTests.expected_imms2) # UPDATE is currently the default action-flag
expected_imms = json.dumps(expected_imms_value)
self.assertEqual(flatJSON, expected_imms)
errorRecords = FHIRConverter.getErrorRecords()
self.assertEqual(len(errorRecords), 0)
def test_fhir_converter_json_error_scenario(self):
"""it should convert fhir json data to flat json - error scenarios"""
error_test_cases = [ErrorValuesForTests.missing_json, ErrorValuesForTests.json_dob_error]
for test_case in error_test_cases:
json_data = json.dumps(test_case)
FHIRConverter = Converter(json_data)
FHIRConverter.runConversion(ValuesForTests.json_data, False, True)
errorRecords = FHIRConverter.getErrorRecords()
# Check if bad data creates error records
self.assertTrue(len(errorRecords) > 0)
def test_handler_imms_convert_to_flat_json(self):
"""Test that the Imms field contains the correct flat JSON data for CREATE, UPDATE, and DELETE operations."""
expected_action_flags = [
{"Operation": Operation.CREATE, "EXPECTED_ACTION_FLAG": ActionFlag.CREATE},
{"Operation": Operation.UPDATE, "EXPECTED_ACTION_FLAG": ActionFlag.UPDATE},
{"Operation": Operation.DELETE_LOGICAL, "EXPECTED_ACTION_FLAG": ActionFlag.DELETE_LOGICAL},
]
for test_case in expected_action_flags:
with self.subTest(test_case["Operation"]):
event = self.get_event(operation=test_case["Operation"])
response = handler(event, None)
# Retrieve items from DynamoDB
result = self.table.scan()
items = result.get("Items", [])
expected_values = ValuesForTests.expected_static_values
expected_imms = ValuesForTests.get_expected_imms(test_case["EXPECTED_ACTION_FLAG"])
self.assert_dynamodb_record(
test_case["Operation"],
test_case["EXPECTED_ACTION_FLAG"],
items,
expected_values,
expected_imms,
response
)
result = self.table.scan()
items = result.get("Items", [])
self.clear_table()
def test_conversionCount(self):
parser = SchemaParser()
schema_data = {"conversions": [{"conversion": "type1"}, {"conversion": "type2"}, {"conversion": "type3"}]}
parser.parseSchema(schema_data)
self.assertEqual(parser.conversionCount(), 3)
def test_getConversion(self):
parser = SchemaParser()
schema_data = {"conversions": [{"conversion": "type1"}, {"conversion": "type2"}, {"conversion": "type3"}]}
parser.parseSchema(schema_data)
self.assertEqual(parser.getConversion(1), {"conversion": "type2"})
# TODO revisit and amend if necessary
@patch("Converter.FHIRParser")
def test_fhir_parser_exception(self, mock_fhir_parser):
# Mock FHIRParser to raise an exception
mock_fhir_parser.side_effect = Exception("FHIR Parsing Error")
converter = Converter(fhir_data="some_data")
response = converter.runConversion("somedata")
# Check if the error message was added to ErrorRecords
self.assertEqual(len(response), 2)
self.assertIn("FHIR Parser Unexpected exception", converter.getErrorRecords()[0]["message"])
self.assertEqual(converter.getErrorRecords()[0]["code"], 0)
@patch("Converter.FHIRParser")
@patch("Converter.SchemaParser")
def test_schema_parser_exception(self, mock_schema_parser, mock_fhir_parser):
# Mock FHIRParser to return normally
mock_fhir_instance = Mock()
mock_fhir_instance.parseFHIRData.return_value = None
mock_fhir_parser.return_value = mock_fhir_instance
# Mock SchemaParser to raise an exception
mock_schema_parser.side_effect = Exception("Schema Parsing Error")
converter = Converter(fhir_data="{}")
converter.runConversion("some_data")
# Check if the error message was added to ErrorRecords
errors = converter.getErrorRecords()
self.assertEqual(len(errors), 1)
self.assertIn("Schema Parser Unexpected exception", errors[0]["message"])
self.assertEqual(errors[0]["code"], 0)
@patch("Converter.ConversionChecker")
def test_conversion_checker_exception(self, mock_conversion_checker):
# Mock ConversionChecker to raise an exception
mock_conversion_checker.side_effect = Exception("Conversion Checking Error")
converter = Converter(fhir_data="some_data")
response = converter.runConversion(ValuesForTests.json_data)
# Check if the error message was added to ErrorRecords
self.assertEqual(len(converter.getErrorRecords()), 1)
self.assertIn(
"FHIR Parser Unexpected exception [JSONDecodeError]: Expecting value: line 1 column 1 (char 0)",
converter.getErrorRecords()[0]["message"],
)
self.assertEqual(converter.getErrorRecords()[0]["code"], 0)
@patch("Converter.SchemaParser.getConversions")
def test_get_conversions_exception(self, mock_get_conversions):
# Mock getConversions to raise an exception
mock_get_conversions.side_effect = Exception("Error while getting conversions")
converter = Converter(fhir_data="some_data")
response = converter.runConversion(ValuesForTests.json_data)
# Check if the error message was added to ErrorRecords
self.assertEqual(len(converter.getErrorRecords()), 1)
self.assertIn(
"FHIR Parser Unexpected exception [JSONDecodeError]: Expecting value: line 1 column 1 (char 0)",
converter.getErrorRecords()[0]["message"],
)
self.assertEqual(converter.getErrorRecords()[0]["code"], 0)
@patch("Converter.SchemaParser.getConversions")
@patch("Converter.FHIRParser.getKeyValue")
def test_conversion_exceptions(self, mock_get_key_value, mock_get_conversions):
mock_get_conversions.side_effect = Exception("Error while getting conversions")
mock_get_key_value.side_effect = Exception("Key value retrieval failed")
converter = Converter(fhir_data="some_data")
schema = {
"conversions": [
{
"fieldNameFHIR": "some_field",
"fieldNameFlat": "flat_field",
"expression": {"expressionType": "type", "expressionRule": "rule"},
}
]
}
converter.SchemaFile = schema
response = converter.runConversion(ValuesForTests.json_data)
error_records = converter.getErrorRecords()
self.assertEqual(len(error_records), 1)
self.assertIn(
"FHIR Parser Unexpected exception [JSONDecodeError]: Expecting value: line 1 column 1 (char 0)",
error_records[0]["message"],
)
self.assertEqual(error_records[0]["code"], 0)
@patch("ConversionChecker.LookUpData")
def test_log_error(self, MockLookUpData):
# Instantiate ConversionChecker
checker = ConversionChecker(dataParser=None, summarise=False, report_unexpected_exception=True)
# Simulate an exception
exception = ValueError("Invalid value")
# Call the _log_error method twice to also check deduplication
checker._log_error("test_field", "test_value", exception)
checker._log_error("test_field", "test_value", exception)
# Assert that only one error record is added due to deduplication
self.assertEqual(len(checker.errorRecords), 2)
# Assert that one error record is added
self.assertEqual(len(checker.errorRecords), 2)
error = checker.errorRecords[0]
# Assert that the error record contains correct details
self.assertEqual(error["field"], "test_field")
self.assertEqual(error["value"], "test_value")
self.assertIn("Invalid value", error["message"])
self.assertEqual(error["code"], ExceptionMessages.RECORD_CHECK_FAILED)
@patch("ConversionChecker.LookUpData")
def test_convert_to_not_empty(self, MockLookUpData):
dataParser = Mock()
checker = ConversionChecker(dataParser, summarise=False, report_unexpected_exception=True)
result = checker._convertToNotEmpty(None, "fieldName", "Some data", False, True)
self.assertEqual(result, "Some data")
result = checker._convertToNotEmpty(None, "fieldName", "", False, True)
self.assertEqual(result, "")
# Test for value that is not a string
checker._log_error = Mock()
result = checker._convertToNotEmpty(None, "fieldName", 12345, False, True)
self.assertEqual(result, "")
checker._log_error.assert_called_once()
field, value, err = checker._log_error.call_args[0]
self.assertEqual((field, value), ("fieldName",12345))
self.assertIsInstance(err, str)
self.assertIn("Value not a String", err)
checker._log_error.reset_mock()
# Simulate a fieldValue whose .strip() crashes to test exception handling
checker._log_error = Mock()
class BadString(str):
def strip(self):
raise RuntimeError("Simulated crash during strip")
bad_value = BadString("some bad string")
# Make the .strip() method crash
result = checker._convertToNotEmpty(None, "fieldName", bad_value, False, True)
self.assertEqual(result, "") # Should return empty string on exception
checker._log_error.assert_called_once()
field, value, message = checker._log_error.call_args[0]
self.assertEqual((field, value), ("fieldName", bad_value))
self.assertIsInstance(message, str)
self.assertIn("RuntimeError", message)
@patch("ConversionChecker.LookUpData")
def test_convert_to_nhs_number(self, MockLookUpData):
dataParser = Mock()
checker = ConversionChecker(dataParser, summarise=False, report_unexpected_exception=True)
# Test empty NHS number
empty_nhs_number = ""
result = checker._convertToNHSNumber(None, "fieldName", empty_nhs_number, False, True)
self.assertEqual(result, "", "Expected empty string for empty NHS number input")
# Test valid NHS number
valid_nhs_number = "6000000000"
result = checker._convertToNHSNumber("NHSNUMBER", "fieldName", valid_nhs_number, False, True)
self.assertEqual(result, "6000000000", "Valid NHS number should be returned as-is")
# Test invalid NHS number
invalid_nhs_number = "1234567890243"
result = checker._convertToNHSNumber("NHSNUMBER","fieldName", invalid_nhs_number, False, True)
self.assertEqual(result, "", "Invalid NHS number should return empty string")
@patch("ConversionChecker.LookUpData")
def test_convert_to_date(self, MockLookUpData):
dataParser = Mock()
checker = ConversionChecker(dataParser, summarise=False, report_unexpected_exception=True)
# 1. Valid full date
result = checker._convertToDate("%Y%m%d", "fieldName", "2022-01-01", False, True)
self.assertEqual(result, "20220101")
# 2.Full ISO date should be transformed to YYYYMMDD
result = checker._convertToDate("%Y%m%d", "fieldName", "2022-01-01T12:00:00+00:00", False, True)
self.assertEqual(result, "20220101")
# 3. Invalid string date format (should trigger "Date must be in YYYYMMDD format")
result = checker._convertToDate("%Y%m%d", "fieldName", "invalid_date", False, True)
self.assertEqual(result, "")
# 4. None input (should return empty without logging)
result = checker._convertToDate("%Y%m%d", "fieldName", None, False, True)
self.assertEqual(result, "")
# 5. Not a string input (should trigger "Value is not a string")
result = checker._convertToDate("%Y%m%d", "fieldName", 12345678, False, True)
self.assertEqual(result, "")
# 6 Empty string
result = checker._convertToDate("%Y%m%d", "fieldName", "", False, True)
self.assertEqual(result, "")
# 7 Validate all error logs of various responses
messages = [err["message"] for err in checker.errorRecords]
self.assertIn("Value is not a string", messages)
# Confirm Total Errors Per conversion
self.assertEqual(len(checker.errorRecords), 2)
# Test for value Error
checker._log_error = Mock()
# invalid date against the given format → ValueError path
result = checker._convertToDate("format:%Y-%m-%d", "fieldName", "not-a-date", False, True)
self.assertEqual(result, "")
# ensure we logged exactly that ValueError
checker._log_error.assert_called_once()
field, value, err = checker._log_error.call_args[0]
self.assertEqual((field, value), ("fieldName", "not-a-date"))
self.assertIsInstance(err, ValueError)
@patch("ConversionChecker.LookUpData")
def test_convert_to_date_time(self, MockLookUpData):
dataParser = Mock()
checker = ConversionChecker(dataParser, summarise=False, report_unexpected_exception=True)
valid_date_time = "2025-01-01T12:00:00+00:00"
result = checker._convertToDateTime("fhir-date", "fieldName", valid_date_time, False, True)
self.assertEqual(result, "20250101T12000000")
valid_fhir_date = "2025-01-01T13:28:17+00:00"
result = checker._convertToDateTime("fhir-date", "fieldName", valid_fhir_date, False, True)
self.assertEqual(result, "20250101T13281700")
valid_fhir_date = "2022-01-01"
result = checker._convertToDateTime("", "fieldName", valid_fhir_date, False, True)
self.assertEqual(result, "20220101T00000000")
valid_fhir_date = "2025-05-01T13:28:17+01:00"
result = checker._convertToDateTime("fhir-date", "fieldName", valid_fhir_date, False, True)
self.assertEqual(result, "20250501T13281701")
invalid_date_time = "invalid_date_time"
result = checker._convertToDateTime("fhir-date", "fieldName", invalid_date_time, False, True)
self.assertEqual(result, "")
valid_date_time = "2025-01-01T12:00:00+03:00"
result = checker._convertToDateTime("fhir-date", "fieldName", valid_date_time, False, True)
self.assertEqual(result, "")
messages = [err["message"] for err in checker.errorRecords]
self.assertIn("Unexpected exception [ValueError]", messages[0])
self.assertIn("Unsupported Format or offset", messages[1])
# Confirm Total Errors Per conversion
self.assertEqual(len(checker.errorRecords), 2)
# Test for value Error
checker._log_error = Mock()
valid_fhir_date = "2022-01"
result = checker._convertToDateTime("fhir-date", "fieldName", valid_fhir_date, False, True)
self.assertEqual(result, "")
# ensure we logged exactly that ValueError
checker._log_error.assert_called_once()
field, value, err = checker._log_error.call_args[0]
self.assertEqual((field, value), ("fieldName", valid_fhir_date))
self.assertIsInstance(err, ValueError)
@patch("ConversionChecker.LookUpData")
def test_convert_to_boolean(self, MockLookUpData):
dataParser = Mock()
checker = ConversionChecker(dataParser, summarise=False, report_unexpected_exception=True)
# Arrange
dataParser = Mock()
checker = ConversionChecker(dataParser, summarise=False, report_unexpected_exception=True)
# 1. Boolean True passes through
result = checker._convertToBoolean(None, "fieldName", True, False, True)
self.assertTrue(result)
# 2. Boolean False passes through
result = checker._convertToBoolean(None, "fieldName", False, False, True)
self.assertFalse(result)
# 3. String "true" variants
for val in ["true", "TRUE", " True ", "\tTrUe\n"]:
result = checker._convertToBoolean(None, "fieldName", val, False, False)
self.assertTrue(result)
# 4. String "false" variants
for val in ["false", "FALSE", " False ", "\nFaLsE\t"]:
result = checker._convertToBoolean(None, "fieldName", val, False, False)
self.assertFalse(result)
# 5. Invalid string with report_unexpected_exception=False → no log
result = checker._convertToBoolean(None, "fieldName", "notbool", False, True)
self.assertEqual(result, "")
# Assert exactly one error was logged
self.assertEqual(len(checker.errorRecords), 1)
err = checker.errorRecords[0]
self.assertEqual(err["field"], "fieldName")
self.assertEqual(err["value"], "notbool")
# message should include our literal
self.assertIn("Invalid String Data", err["message"])
# and code should default to UNEXPECTED_EXCEPTION
self.assertEqual(err["code"], ExceptionMessages.RECORD_CHECK_FAILED)
#check for dose sequence
@patch("ConversionChecker.LookUpData")
def test_convert_to_dose(self, MockLookUpData):
dataParser = Mock()
checker = ConversionChecker(dataParser, summarise=False, report_unexpected_exception=True)
# Valid dose
for dose in [1, 4, 9]:
with self.subTest(dose=dose):
result = checker._convertToDose("DOSESEQUENCE", "DOSE_AMOUNT", dose, False, True)
self.assertEqual(result, dose)
# Invalid dose
invalid_doses = [10, 10.1, 100, 9.0001]
for dose in invalid_doses:
with self.subTest(dose=dose):
result = checker._convertToDose("DOSESEQUENCE", "DOSE_AMOUNT", dose, False, True)
self.assertEqual(result, "", f"Expected empty string for invalid dose {dose}")
def clear_table(self):
scan = self.table.scan()
with self.table.batch_writer() as batch:
for item in scan.get("Items", []):
batch.delete_item(Key={"PK": item["PK"]})
result = self.table.scan()
items = result.get("Items", [])
if __name__ == "__main__":
unittest.main()