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‎.github/workflows/sonarcloud.yml‎

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name: SonarCloud
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on:
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push:
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branches:
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- master
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pull_request:
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types: [labeled, opened, synchronize, reopened, unlabeled]
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push:
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branches:
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- master
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pull_request:
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types: [labeled, opened, synchronize, reopened, unlabeled]
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jobs:
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sonarcloud:
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name: SonarCloud
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if: ${{ !contains(github.event.pull_request.labels.*.name, 'dependency') }}
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runs-on: ubuntu-latest
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sonarcloud:
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name: SonarCloud
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if: ${{ !contains(github.event.pull_request.labels.*.name, 'dependency') }}
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runs-on: ubuntu-latest
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steps:
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- uses: actions/checkout@v4
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with:
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fetch-depth: 0
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steps:
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- uses: actions/checkout@v4
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with:
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fetch-depth: 0
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- name: Set up AWS credentials
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env:
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AWS_ACCESS_KEY_ID: "FOOBARKEY"
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AWS_SECRET_ACCESS_KEY: "FOOBARSECRET"
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run: |
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aws configure set aws_access_key_id $AWS_ACCESS_KEY_ID
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aws configure set aws_secret_access_key $AWS_SECRET_ACCESS_KEY
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- name: Set up AWS credentials
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env:
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AWS_ACCESS_KEY_ID: "FOOBARKEY"
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AWS_SECRET_ACCESS_KEY: "FOOBARSECRET"
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run: |
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aws configure set aws_access_key_id $AWS_ACCESS_KEY_ID
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aws configure set aws_secret_access_key $AWS_SECRET_ACCESS_KEY
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- name: Initialize Unit Test Failure Tracker
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run: echo "false" > test_failed.txt
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- name: Initialize Unit Test Failure Tracker
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run: echo "false" > test_failed.txt
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# - name: Run unittest with filenameprocessor-coverage
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# id: filenameprocessor
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# continue-on-error: true
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# run: |
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# pip install poetry==1.8.4 moto==4.2.11 coverage redis botocore==1.35.49 simplejson pandas freezegun responses structlog fhir.resources jsonpath_ng pydantic==1.10.13 requests aws-lambda-typing cffi pyjwt boto3-stubs-lite[dynamodb]~=1.26.90 python-stdnum==1.20 fakeredis
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# poetry run coverage run --source=filenameprocessor -m unittest discover -s filenameprocessor || echo "filenameprocessor tests failed" >> failed_tests.txt
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# poetry run coverage xml -o sonarcloud-coverage-filenameprocessor-coverage.xml
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# - name: Run unittest with filenameprocessor-coverage
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# id: filenameprocessor
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# continue-on-error: true
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# run: |
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# pip install poetry==1.8.4 moto==4.2.11 coverage redis botocore==1.35.49 simplejson pandas freezegun responses structlog fhir.resources jsonpath_ng pydantic==1.10.13 requests aws-lambda-typing cffi pyjwt boto3-stubs-lite[dynamodb]~=1.26.90 python-stdnum==1.20 fakeredis
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# poetry run coverage run --source=filenameprocessor -m unittest discover -s filenameprocessor || echo "filenameprocessor tests failed" >> failed_tests.txt
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# poetry run coverage xml -o sonarcloud-coverage-filenameprocessor-coverage.xml
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# - name: Run unittest with recordprocessor-coverage
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# id: recordprocessor
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# continue-on-error: true
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# run: |
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# poetry run coverage run --source=recordprocessor -m unittest discover -s recordprocessor || echo "recordprocessor tests failed" >> failed_tests.txt
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# poetry run coverage xml -o sonarcloud-coverage-recordprocessor-coverage.xml
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# - name: Run unittest with recordprocessor-coverage
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# id: recordprocessor
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# continue-on-error: true
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# run: |
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# poetry run coverage run --source=recordprocessor -m unittest discover -s recordprocessor || echo "recordprocessor tests failed" >> failed_tests.txt
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# poetry run coverage xml -o sonarcloud-coverage-recordprocessor-coverage.xml
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# - name: Run unittest with recordforwarder-coverage
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# id: recordforwarder
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# continue-on-error: true
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# run: |
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# PYTHONPATH=$(pwd)/backend:$(pwd)/backend/tests poetry run coverage run --source=backend -m unittest discover -s backend/tests -p "*batch*.py" || echo "recordforwarder tests failed" >> failed_tests.txt
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# poetry run coverage xml -o sonarcloud-coverage-recordforwarder-coverage.xml
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# - name: Run unittest with recordforwarder-coverage
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# id: recordforwarder
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# continue-on-error: true
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# run: |
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# PYTHONPATH=$(pwd)/backend:$(pwd)/backend/tests poetry run coverage run --source=backend -m unittest discover -s backend/tests -p "*batch*.py" || echo "recordforwarder tests failed" >> failed_tests.txt
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# poetry run coverage xml -o sonarcloud-coverage-recordforwarder-coverage.xml
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# - name: Run unittest with coverage-ack-lambda
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# id: acklambda
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# continue-on-error: true
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# run: |
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# pip install poetry==1.8.4 coverage moto==4.2.11 freezegun
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# poetry run coverage run --source=ack_backend -m unittest discover -s ack_backend || echo "ack-lambda tests failed" >> failed_tests.txt
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# poetry run coverage xml -o sonarcloud-coverage-ack-lambda.xml
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# - name: Run unittest with coverage-ack-lambda
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# id: acklambda
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# continue-on-error: true
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# run: |
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# pip install poetry==1.8.4 coverage moto==4.2.11 freezegun
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# poetry run coverage run --source=ack_backend -m unittest discover -s ack_backend || echo "ack-lambda tests failed" >> failed_tests.txt
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# poetry run coverage xml -o sonarcloud-coverage-ack-lambda.xml
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- name: Run unittest with coverage-delta
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id: delta
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continue-on-error: true
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run: |
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pip install poetry==1.8.4 mypy-boto3-dynamodb==1.35.54 boto3==1.26.165 coverage botocore==1.29.165 jmespath==1.0.1 python-dateutil==2.9.0 urllib3==1.26.20 s3transfer==0.6.2 typing-extensions==4.12.2
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poetry run coverage run --source=delta_backend -m unittest discover -s delta_backend || echo "delta tests failed" >> failed_tests.txt
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poetry run coverage xml -o sonarcloud-coverage-delta.xml
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- name: Run unittest with coverage-delta
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id: delta
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continue-on-error: true
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run: |
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pip install poetry==1.8.4 mypy-boto3-dynamodb==1.35.54 boto3==1.26.165 coverage botocore==1.29.165 jmespath==1.0.1 python-dateutil==2.9.0 urllib3==1.26.20 s3transfer==0.6.2 typing-extensions==4.12.2
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poetry run coverage run --source=delta_backend -m unittest discover -s delta_backend || echo "delta tests failed" >> failed_tests.txt
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poetry run coverage xml -o sonarcloud-coverage-delta.xml
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# - name: Run unittest with coverage-fhir-api
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# id: fhirapi
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# continue-on-error: true
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# run: |
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# pip install poetry==1.8.4 moto==4.2.11 coverage redis botocore==1.35.49 simplejson responses structlog fhir.resources jsonpath_ng pydantic==1.10.13 requests aws-lambda-typing cffi pyjwt boto3-stubs-lite[dynamodb]~=1.26.90 python-stdnum==1.20
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# poetry run coverage run --source=backend -m unittest discover -s backend || echo "fhir-api tests failed" >> failed_tests.txt
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# poetry run coverage xml -o sonarcloud-coverage.xml
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# - name: Run unittest with coverage-fhir-api
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# id: fhirapi
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# continue-on-error: true
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# run: |
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# pip install poetry==1.8.4 moto==4.2.11 coverage redis botocore==1.35.49 simplejson responses structlog fhir.resources jsonpath_ng pydantic==1.10.13 requests aws-lambda-typing cffi pyjwt boto3-stubs-lite[dynamodb]~=1.26.90 python-stdnum==1.20
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# poetry run coverage run --source=backend -m unittest discover -s backend || echo "fhir-api tests failed" >> failed_tests.txt
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# poetry run coverage xml -o sonarcloud-coverage.xml
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# - name: Run unittest with coverage-mesh-processor
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# id: meshprocessor
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# continue-on-error: true
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# run: |
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# pip install poetry==1.8.4 moto==4.2.11 coverage redis botocore==1.35.49 simplejson responses structlog fhir.resources jsonpath_ng pydantic==1.10.13 requests aws-lambda-typing cffi pyjwt boto3-stubs-lite[dynamodb]~=1.26.90 python-stdnum==1.20
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# poetry run coverage run --source=mesh_processor -m unittest discover -s mesh_processor || echo "mesh_processor tests failed" >> failed_tests.txt
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# poetry run coverage xml -o sonarcloud-mesh_processor-coverage.xml
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# - name: Run unittest with coverage-mesh-processor
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# id: meshprocessor
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# continue-on-error: true
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# run: |
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# pip install poetry==1.8.4 moto==4.2.11 coverage redis botocore==1.35.49 simplejson responses structlog fhir.resources jsonpath_ng pydantic==1.10.13 requests aws-lambda-typing cffi pyjwt boto3-stubs-lite[dynamodb]~=1.26.90 python-stdnum==1.20
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# poetry run coverage run --source=mesh_processor -m unittest discover -s mesh_processor || echo "mesh_processor tests failed" >> failed_tests.txt
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# poetry run coverage xml -o sonarcloud-mesh_processor-coverage.xml
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- name: Run Test Failure Summary
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id: check_failure
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run: |
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if [ -s failed_tests.txt ]; then
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echo "The following tests failed:"
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cat failed_tests.txt
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- name: Run Test Failure Summary
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id: check_failure
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run: |
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if [ -s failed_tests.txt ]; then
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echo "The following tests failed:"
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cat failed_tests.txt
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while IFS= read -r line; do
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echo "##[error]Test Failures: $line"
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done < failed_tests.txt
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exit 1
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else
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echo "All tests passed."
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fi
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while IFS= read -r line; do
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echo "##[error]Test Failures: $line"
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done < failed_tests.txt
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exit 1
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else
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echo "All tests passed."
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fi
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- name: SonarCloud Scan
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uses: SonarSource/sonarqube-scan-action@master
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env:
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GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }} # Needed to get PR information, if any
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SONAR_TOKEN: ${{ secrets.SONAR_TOKEN }}
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- name: SonarCloud Scan
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uses: SonarSource/sonarqube-scan-action@master
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env:
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GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }} # Needed to get PR information, if any
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SONAR_TOKEN: ${{ secrets.SONAR_TOKEN }}

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