update sonarcloud

Author: nhsdevws

.github/workflows/sonarcloud.yml

@@ -29,59 +29,61 @@ jobs:
       - name: Initialize Unit Test Failure Tracker
         run: echo "false" > test_failed.txt
 
-      - name: Run unittest with filenameprocessor-coverage
-        id: filenameprocessor
-        continue-on-error: true
-        run: |
-          pip install poetry==1.8.4 moto==4.2.11 coverage redis botocore==1.35.49 simplejson pandas freezegun responses structlog fhir.resources jsonpath_ng pydantic==1.10.13 requests aws-lambda-typing cffi pyjwt boto3-stubs-lite[dynamodb]~=1.26.90 python-stdnum==1.20 fakeredis
-          poetry run coverage run --source=filenameprocessor -m unittest discover -s filenameprocessor || echo "filenameprocessor tests failed" >> failed_tests.txt
-          poetry run coverage xml -o sonarcloud-coverage-filenameprocessor-coverage.xml
+      # - name: Run unittest with filenameprocessor-coverage
+      #   id: filenameprocessor
+      #   continue-on-error: true
+      #   run: |
+      #     pip install poetry==1.8.4 moto==4.2.11 coverage redis botocore==1.35.49 simplejson pandas freezegun responses structlog fhir.resources jsonpath_ng pydantic==1.10.13 requests aws-lambda-typing cffi pyjwt boto3-stubs-lite[dynamodb]~=1.26.90 python-stdnum==1.20 fakeredis
+      #     poetry run coverage run --source=filenameprocessor -m unittest discover -s filenameprocessor || echo "filenameprocessor tests failed" >> failed_tests.txt
+      #     poetry run coverage xml -o sonarcloud-coverage-filenameprocessor-coverage.xml
 
-      - name: Run unittest with recordprocessor-coverage
-        id: recordprocessor
-        continue-on-error: true
-        run: |
-          poetry run coverage run --source=recordprocessor -m unittest discover -s recordprocessor || echo "recordprocessor tests failed" >> failed_tests.txt
-          poetry run coverage xml -o sonarcloud-coverage-recordprocessor-coverage.xml
+      # - name: Run unittest with recordprocessor-coverage
+      #   id: recordprocessor
+      #   continue-on-error: true
+      #   run: |
+      #     poetry run coverage run --source=recordprocessor -m unittest discover -s recordprocessor || echo "recordprocessor tests failed" >> failed_tests.txt
+      #     poetry run coverage xml -o sonarcloud-coverage-recordprocessor-coverage.xml
 
-      - name: Run unittest with recordforwarder-coverage
-        id: recordforwarder
-        continue-on-error: true
-        run: |
-          PYTHONPATH=$(pwd)/backend:$(pwd)/backend/tests poetry run coverage run --source=backend -m unittest discover -s backend/tests -p "*batch*.py" || echo "recordforwarder tests failed" >> failed_tests.txt
-          poetry run coverage xml -o sonarcloud-coverage-recordforwarder-coverage.xml
+      # - name: Run unittest with recordforwarder-coverage
+      #   id: recordforwarder
+      #   continue-on-error: true
+      #   run: |
+      #     PYTHONPATH=$(pwd)/backend:$(pwd)/backend/tests poetry run coverage run --source=backend -m unittest discover -s backend/tests -p "*batch*.py" || echo "recordforwarder tests failed" >> failed_tests.txt
+      #     poetry run coverage xml -o sonarcloud-coverage-recordforwarder-coverage.xml
 
-      - name: Run unittest with coverage-ack-lambda
-        id: acklambda
-        continue-on-error: true
-        run: |
-          pip install poetry==1.8.4 coverage moto==4.2.11 freezegun
-          poetry run coverage run --source=ack_backend -m unittest discover -s ack_backend || echo "ack-lambda tests failed" >> failed_tests.txt
-          poetry run coverage xml -o sonarcloud-coverage-ack-lambda.xml
+      # - name: Run unittest with coverage-ack-lambda
+      #   id: acklambda
+      #   continue-on-error: true
+      #   run: |
+      #     pip install poetry==1.8.4 coverage moto==4.2.11 freezegun
+      #     poetry run coverage run --source=ack_backend -m unittest discover -s ack_backend || echo "ack-lambda tests failed" >> failed_tests.txt
+      #     poetry run coverage xml -o sonarcloud-coverage-ack-lambda.xml
 
       - name: Run unittest with coverage-delta
         id: delta
+        env:
+            PYTHONPATH: delta_backend/src:delta_backend/tests
         continue-on-error: true
         run: |
-          pip install poetry==1.8.4 mypy-boto3-dynamodb==1.35.54 boto3==1.26.165 coverage botocore==1.29.165 jmespath==1.0.1 python-dateutil==2.9.0 urllib3==1.26.20 s3transfer==0.6.2 typing-extensions==4.12.2
+          pip install poetry==1.8.4 moto==4.2.11 mypy-boto3-dynamodb==1.35.54 boto3==1.26.165 coverage botocore==1.29.165 jmespath==1.0.1 python-dateutil==2.9.0 urllib3==1.26.20 s3transfer==0.6.2 typing-extensions==4.12.2
           poetry run coverage run --source=delta_backend -m unittest discover -s delta_backend || echo "delta tests failed" >> failed_tests.txt
           poetry run coverage xml -o sonarcloud-coverage-delta.xml
 
-      - name: Run unittest with coverage-fhir-api
-        id: fhirapi
-        continue-on-error: true
-        run: |
-          pip install poetry==1.8.4 moto==4.2.11 coverage redis botocore==1.35.49 simplejson responses structlog fhir.resources jsonpath_ng pydantic==1.10.13 requests aws-lambda-typing cffi pyjwt boto3-stubs-lite[dynamodb]~=1.26.90 python-stdnum==1.20
-          poetry run coverage run --source=backend -m unittest discover -s backend || echo "fhir-api tests failed" >> failed_tests.txt
-          poetry run coverage xml -o sonarcloud-coverage.xml
+      # - name: Run unittest with coverage-fhir-api
+      #   id: fhirapi
+      #   continue-on-error: true
+      #   run: |
+      #     pip install poetry==1.8.4 moto==4.2.11 coverage redis botocore==1.35.49 simplejson responses structlog fhir.resources jsonpath_ng pydantic==1.10.13 requests aws-lambda-typing cffi pyjwt boto3-stubs-lite[dynamodb]~=1.26.90 python-stdnum==1.20
+      #     poetry run coverage run --source=backend -m unittest discover -s backend || echo "fhir-api tests failed" >> failed_tests.txt
+      #     poetry run coverage xml -o sonarcloud-coverage.xml
 
-      - name: Run unittest with coverage-mesh-processor
-        id: meshprocessor
-        continue-on-error: true
-        run: |
-          pip install poetry==1.8.4 moto==4.2.11 coverage redis botocore==1.35.49 simplejson responses structlog fhir.resources jsonpath_ng pydantic==1.10.13 requests aws-lambda-typing cffi pyjwt boto3-stubs-lite[dynamodb]~=1.26.90 python-stdnum==1.20
-          poetry run coverage run --source=mesh_processor -m unittest discover -s mesh_processor || echo "mesh_processor tests failed" >> failed_tests.txt
-          poetry run coverage xml -o sonarcloud-mesh_processor-coverage.xml
+      # - name: Run unittest with coverage-mesh-processor
+      #   id: meshprocessor
+      #   continue-on-error: true
+      #   run: |
+      #     pip install poetry==1.8.4 moto==4.2.11 coverage redis botocore==1.35.49 simplejson responses structlog fhir.resources jsonpath_ng pydantic==1.10.13 requests aws-lambda-typing cffi pyjwt boto3-stubs-lite[dynamodb]~=1.26.90 python-stdnum==1.20
+      #     poetry run coverage run --source=mesh_processor -m unittest discover -s mesh_processor || echo "mesh_processor tests failed" >> failed_tests.txt
+      #     poetry run coverage xml -o sonarcloud-mesh_processor-coverage.xml
 
       - name: Run Test Failure Summary
         id: check_failure