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‎.github/workflows/coverage.yml‎

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name: Coverage report
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on:
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pull_request:
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types: [opened]
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jobs:
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coverage:
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runs-on: ubuntu-latest
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steps:
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- name: Checkout code
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uses: actions/checkout@v2
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- name: Set up Python
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uses: actions/setup-python@v3
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with:
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python-version: '3.10'
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- name: Set up AWS credentials
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env:
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AWS_ACCESS_KEY_ID: "FOOBARKEY"
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AWS_SECRET_ACCESS_KEY: "FOOBARSECRET"
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run: |
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aws configure set aws_access_key_id $AWS_ACCESS_KEY_ID
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aws configure set aws_secret_access_key $AWS_SECRET_ACCESS_KEY
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- name: Install dependencies
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run: |
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pip install poetry moto==4.2.11 coverage redis botocore==1.35.49 simplejson responses structlog fhir.resources jsonpath_ng pydantic==1.10.13 requests aws-lambda-typing cffi pyjwt boto3-stubs-lite[dynamodb]~=1.26.90
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- name: Run unit tests and generate coverage report for filenameprocessor
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run: |
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mkdir -p /home/runner/work/immunisation-fhir-api/immunisation-fhir-api/backend/coverage_html_report
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coverage run -m unittest discover
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coverage report
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coverage xml -o /home/runner/work/immunisation-fhir-api/immunisation-fhir-api/backend/coverage_html_report/test_coverage.xml
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working-directory: "/home/runner/work/immunisation-fhir-api/immunisation-fhir-api/backend"
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continue-on-error: true
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- name: List coverage report file
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run: |
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ls -R /home/runner/work/immunisation-fhir-api/immunisation-fhir-api/backend/coverage_html_report
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- name: Aggregate coverage reports
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run: |
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mkdir -p /home/runner/work/immunisation-fhir-api/immunisation-fhir-api/coverage_html_report
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rm -rf /home/runner/work/immunisation-fhir-api/immunisation-fhir-api/coverage_html_report/*
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mv /home/runner/work/immunisation-fhir-api/immunisation-fhir-api/backend/coverage_html_report/test_coverage.xml /home/runner/work/immunisation-fhir-api/immunisation-fhir-api/coverage_html_report/test_coverage.xml
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- name: Commit and push coverage reports
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if: success()
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run: |
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git config --global user.name "github-actions[bot]"
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git config --global user.email "github-actions[bot]@users.noreply.github.com"
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git fetch origin ${{ github.head_ref }}
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git checkout ${{ github.head_ref }}
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git pull origin ${{ github.head_ref }}
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git add /home/runner/work/immunisation-fhir-api/immunisation-fhir-api/coverage_html_report/*.xml
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git commit -m "Add coverage index as XML format."
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git push origin ${{ github.head_ref }}

‎.github/workflows/pr-lint.yaml‎

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This branch is work on a ticket in the NHS Digital AMB JIRA Project. Here's a handy link to the ticket:
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# [${{ env.TICKET_NAME }}](https://nhsd-jira.digital.nhs.uk/browse/${{ env.TICKET_NAME}})
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coverage:
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runs-on: ubuntu-latest
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steps:
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- name: Checkout code
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uses: actions/checkout@v2
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# coverage:
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# runs-on: ubuntu-latest
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# steps:
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# - name: Checkout code
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# uses: actions/checkout@v2
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- name: Set up Python
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uses: actions/setup-python@v3
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with:
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python-version: '3.10'
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# - name: Set up Python
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# uses: actions/setup-python@v3
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# with:
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# python-version: '3.10'
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- name: Set up AWS credentials
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env:
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AWS_ACCESS_KEY_ID: "FOOBARKEY"
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AWS_SECRET_ACCESS_KEY: "FOOBARSECRET"
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run: |
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aws configure set aws_access_key_id $AWS_ACCESS_KEY_ID
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aws configure set aws_secret_access_key $AWS_SECRET_ACCESS_KEY
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# - name: Set up AWS credentials
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# env:
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# AWS_ACCESS_KEY_ID: "FOOBARKEY"
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# AWS_SECRET_ACCESS_KEY: "FOOBARSECRET"
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# run: |
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# aws configure set aws_access_key_id $AWS_ACCESS_KEY_ID
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# aws configure set aws_secret_access_key $AWS_SECRET_ACCESS_KEY
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- name: Install dependencies
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run: |
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pip install poetry moto==4.2.11 coverage redis botocore==1.35.49 simplejson responses structlog fhir.resources jsonpath_ng pydantic==1.10.13 requests aws-lambda-typing cffi pyjwt boto3-stubs-lite[dynamodb]~=1.26.90
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# - name: Install dependencies
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# run: |
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# pip install poetry moto==4.2.11 coverage redis botocore==1.35.49 simplejson responses structlog fhir.resources jsonpath_ng pydantic==1.10.13 requests aws-lambda-typing cffi pyjwt boto3-stubs-lite[dynamodb]~=1.26.90
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- name: Run unit tests and generate coverage report for filenameprocessor
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run: |
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mkdir -p /home/runner/work/immunisation-fhir-api/immunisation-fhir-api/backend/coverage_html_report
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coverage run -m unittest discover
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coverage report
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coverage xml -o /home/runner/work/immunisation-fhir-api/immunisation-fhir-api/backend/coverage_html_report/test_coverage.xml
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working-directory: "/home/runner/work/immunisation-fhir-api/immunisation-fhir-api/backend"
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continue-on-error: true
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# - name: Run unit tests and generate coverage report for filenameprocessor
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# run: |
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# mkdir -p /home/runner/work/immunisation-fhir-api/immunisation-fhir-api/backend/coverage_html_report
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# coverage run -m unittest discover
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# coverage report
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# coverage xml -o /home/runner/work/immunisation-fhir-api/immunisation-fhir-api/backend/coverage_html_report/test_coverage.xml
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# working-directory: "/home/runner/work/immunisation-fhir-api/immunisation-fhir-api/backend"
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# continue-on-error: true
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- name: List coverage report file
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run: |
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ls -R /home/runner/work/immunisation-fhir-api/immunisation-fhir-api/backend/coverage_html_report
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# - name: List coverage report file
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# run: |
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# ls -R /home/runner/work/immunisation-fhir-api/immunisation-fhir-api/backend/coverage_html_report
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- name: Aggregate coverage reports
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run: |
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mkdir -p /home/runner/work/immunisation-fhir-api/immunisation-fhir-api/coverage_html_report
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rm -rf /home/runner/work/immunisation-fhir-api/immunisation-fhir-api/coverage_html_report/*
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mv /home/runner/work/immunisation-fhir-api/immunisation-fhir-api/backend/coverage_html_report/test_coverage.xml /home/runner/work/immunisation-fhir-api/immunisation-fhir-api/coverage_html_report/test_coverage.xml
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# - name: Aggregate coverage reports
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# run: |
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# mkdir -p /home/runner/work/immunisation-fhir-api/immunisation-fhir-api/coverage_html_report
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# rm -rf /home/runner/work/immunisation-fhir-api/immunisation-fhir-api/coverage_html_report/*
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# mv /home/runner/work/immunisation-fhir-api/immunisation-fhir-api/backend/coverage_html_report/test_coverage.xml /home/runner/work/immunisation-fhir-api/immunisation-fhir-api/coverage_html_report/test_coverage.xml
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- name: Commit and push coverage reports
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if: success()
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run: |
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git config --global user.name "github-actions[bot]"
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git config --global user.email "github-actions[bot]@users.noreply.github.com"
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git fetch origin ${{ github.head_ref }}
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git checkout ${{ github.head_ref }}
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git pull origin ${{ github.head_ref }}
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git add /home/runner/work/immunisation-fhir-api/immunisation-fhir-api/coverage_html_report/*.xml
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git commit -m "Add coverage index as XML format."
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git push origin ${{ github.head_ref }}
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# - name: Commit and push coverage reports
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# if: success()
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# run: |
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# git config --global user.name "github-actions[bot]"
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# git config --global user.email "github-actions[bot]@users.noreply.github.com"
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# git fetch origin ${{ github.head_ref }}
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# git checkout ${{ github.head_ref }}
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# git pull origin ${{ github.head_ref }}
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# git add /home/runner/work/immunisation-fhir-api/immunisation-fhir-api/coverage_html_report/*.xml
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# git commit -m "Add coverage index as XML format."
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# git push origin ${{ github.head_ref }}

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