VED-815 Coverage runs (#955)

* local Makefiles

* quality-checks

Author: JamesW1-NHS

.github/workflows/quality-checks.yml

@@ -117,7 +117,7 @@ jobs:
         continue-on-error: true
         run: |
           poetry install
-          poetry run coverage run -m unittest discover -p "*batch*.py" || echo "recordforwarder tests failed" >> ../failed_tests.txt
+          poetry run coverage run --source=src -m unittest discover -p "*batch*.py" || echo "recordforwarder tests failed" >> ../failed_tests.txt
           poetry run coverage xml -o ../recordforwarder-coverage.xml
 
       - name: Run unittest with coverage-fhir-api
@@ -128,7 +128,7 @@ jobs:
         continue-on-error: true
         run: |
           poetry install
-          poetry run coverage run -m unittest discover || echo "fhir-api tests failed" >> ../failed_tests.txt
+          poetry run coverage run --source=src -m unittest discover || echo "fhir-api tests failed" >> ../failed_tests.txt
           poetry run coverage xml -o ../backend-coverage.xml
 
       - name: Run unittest with coverage-ack-lambda
@@ -150,7 +150,7 @@ jobs:
         continue-on-error: true
         run: |
           poetry install
-          poetry run coverage run -m unittest discover || echo "batchprocessorfilter tests failed" >> ../../failed_tests.txt
+          poetry run coverage run --source=src -m unittest discover || echo "batchprocessorfilter tests failed" >> ../../failed_tests.txt
           poetry run coverage xml -o ../../batchprocessorfilter-coverage.xml
 
       - name: Run unittest with coverage-delta
@@ -161,7 +161,7 @@ jobs:
         continue-on-error: true
         run: |
           poetry install
-          poetry run coverage run -m unittest discover || echo "delta tests failed" >> ../../failed_tests.txt
+          poetry run coverage run --source=src -m unittest discover || echo "delta tests failed" >> ../../failed_tests.txt
           poetry run coverage xml -o ../../delta-coverage.xml
 
       - name: Run unittest with filenameprocessor-coverage
@@ -172,7 +172,7 @@ jobs:
         continue-on-error: true
         run: |
           poetry install
-          poetry run coverage run -m unittest discover || echo "filenameprocessor tests failed" >> ../../failed_tests.txt
+          poetry run coverage run --source=src -m unittest discover || echo "filenameprocessor tests failed" >> ../../failed_tests.txt
           poetry run coverage xml -o ../../filenameprocessor-coverage.xml
 
       - name: Run unittest with id_sync
@@ -192,7 +192,7 @@ jobs:
         continue-on-error: true
         run: |
           poetry install
-          poetry run coverage run -m unittest discover || echo "mesh_processor tests failed" >> ../../failed_tests.txt
+          poetry run coverage run --source=src -m unittest discover || echo "mesh_processor tests failed" >> ../../failed_tests.txt
           poetry run coverage xml -o ../../mesh_processor-coverage.xml
 
       - name: Run unittest with coverage-mns-subscription
@@ -203,7 +203,7 @@ jobs:
         continue-on-error: true
         run: |
           poetry install
-          poetry run coverage run -m unittest discover || echo "mns_subscription tests failed" >> ../../failed_tests.txt
+          poetry run coverage run --source=src -m unittest discover || echo "mns_subscription tests failed" >> ../../failed_tests.txt
           poetry run coverage report -m
           poetry run coverage xml -o ../../mns_subscription-coverage.xml
 

backend/Makefile

@@ -9,7 +9,7 @@ test:
 	@PYTHONPATH=src:tests python -m unittest
 
 coverage-run:
-	@PYTHONPATH=src:tests coverage run -m unittest discover
+	@PYTHONPATH=src:tests coverage run --source=src -m unittest discover
 
 coverage-report:
 	coverage report -m 

lambdas/batch_processor_filter/Makefile

@@ -11,7 +11,7 @@ test:
 	$(TEST_ENV) python -m unittest
 
 coverage-run:
-	$(TEST_ENV) coverage run -m unittest discover
+	$(TEST_ENV) coverage run --source=src -m unittest discover
 
 coverage-report:
 	$(TEST_ENV) coverage report -m

lambdas/delta_backend/Makefile

@@ -14,7 +14,7 @@ check-conversion:
 	$(TEST_ENV) python tests/check_conversion.py
 
 coverage-run:
-	$(TEST_ENV) coverage run -m unittest discover -v
+	$(TEST_ENV) coverage run --source=src -m unittest discover -v
 
 coverage-report:
 	$(TEST_ENV) coverage report -m 

lambdas/filenameprocessor/Makefile

@@ -11,7 +11,7 @@ test:
 	$(TEST_ENV) python -m unittest
 
 coverage-run:
-	$(TEST_ENV) coverage run -m unittest discover
+	$(TEST_ENV) coverage run --source=src -m unittest discover
 
 coverage-report:
 	$(TEST_ENV) coverage report -m 

lambdas/id_sync/Makefile

@@ -4,7 +4,7 @@ test:
 	$(TEST_ENV) python -m unittest
 
 coverage-run:
-	$(TEST_ENV) coverage run -m unittest discover -v
+	$(TEST_ENV) coverage run --source=src -m unittest discover -v
 
 coverage-report:
 	$(TEST_ENV) coverage report -m

lambdas/mns_subscription/Makefile

@@ -12,7 +12,7 @@ test:
 	$(TEST_ENV) python -m unittest
 
 coverage-run:
-	$(TEST_ENV) coverage run -m unittest discover
+	$(TEST_ENV) coverage run --source=src -m unittest discover
 
 coverage-report:
 	$(TEST_ENV) coverage report -m 

lambdas/recordprocessor/Makefile

@@ -11,7 +11,7 @@ test:
 	$(TEST_ENV) python -m unittest
 
 coverage-run:
-	$(TEST_ENV) coverage run -m unittest discover
+	$(TEST_ENV) coverage run --source=src -m unittest discover
 
 coverage-report:
 	$(TEST_ENV) coverage report -m

lambdas/redis_sync/Makefile

@@ -4,7 +4,7 @@ test:
 	$(TEST_ENV) python -m unittest
 
 coverage-run:
-	$(TEST_ENV) coverage run -m unittest discover -v
+	$(TEST_ENV) coverage run --source=src -m unittest discover -v
 
 coverage-report:
 	$(TEST_ENV) coverage report -m