debug

Author: nhsdevws

backend/src/a.json

@@ -0,0 +1,22 @@
+{
+    "statusCode": 200, "headers": {"Content-Type": "application/fhir+json"},
+    "body": {
+        "resourceType": "Bundle", "type": "searchset",
+        "link": 
+        [
+            {"relation": "self", "url": "https://internal-dev.api.service.nhs.uk/immunisation-fhir-api-pr-721/Immunization?immunization.target=RSV&patient.identifier=https%3A%2F%2Ffhir.nhs.uk%2FId%2Fnhs-number%7C9693632109"}
+    ],
+        "entry": 
+        [
+            {"fullUrl": "https://api.service.nhs.uk/immunisation-fhir-api/Immunization/5ecf759a-be0f-47ce-bcea-1b35dec6427a",
+            "resource": {"resourceType": "Immunization", "id": "5ecf759a-be0f-47ce-bcea-1b35dec6427a", "extension":
+            [{"url": "https://fhir.hl7.org.uk/StructureDefinition/Extension-UKCore-VaccinationProcedure", "valueCodeableConcept": {"coding":
+            [{"system": "http://snomed.info/sct", "code": "1324681000000101", "display": "Administration of first dose of severe acute respiratory syndrome coronavirus 2 vaccine (procedure)"}]}}],
+            "identifier": [{"use": "official", "system": "https://supplierABC/identifiers/vacc", "value": "efedd295-9867-4f31-833f-0340654930ad"}], "status": "completed", "vaccineCode": {"coding": [{"system": "http://snomed.info/sct", "code": "39114911000001105", "display": "COVID-19 Vaccine Vaxzevria (ChAdOx1 S [recombinant]) not less than 2.5x100,000,000 infectious units/0.5ml dose suspension for injection multidose vials (AstraZeneca UK Ltd) (product)"}]}, "patient": {"reference": "urn:uuid:e40603e8-3097-4bda-bcfd-39a57311dab6", "type": "Patient",
+            "identifier": {"system": "https://fhir.nhs.uk/Id/nhs-number", "value": "9693632109"}}, "occurrenceDateTime": "2021-02-07T13:28:17+00:00", "recorded": "2021-02-07T13:28:17+00:00", "primarySource": true, "location": {"type": "Location", "identifier": {"system": "https://fhir.nhs.uk/Id/ods-organization-code", "value": "X99999"}}, "manufacturer": {"display": "AstraZeneca Ltd"}, "lotNumber": "4120Z001", "expirationDate": "2021-07-02", "site": {"coding": [{"system": "http://snomed.info/sct", "code": "368208006", "display": "Left upper arm structure (body structure)"}]}, "route": {"coding": [{"system": "http://snomed.info/sct", "code": "78421000", "display": "Intramuscular route (qualifier value)"}]}, "doseQuantity": {"value": 0.5, "unit": "milliliter", "system": "http://unitsofmeasure.org", "code": "ml"}, "performer": [{"actor": {"type": "Organization", "identifier": {"system": "https://fhir.hl7.org.uk/Id/urn-school-number", "value": "B0C4P"}}}], "reasonCode": [{"coding": [{"system": "http://snomed.info/sct", "code": "443684005"}]}], "protocolApplied": [{"targetDisease": [{"coding": [{"system": "http://snomed.info/sct", "code": "55735004", "display": "Respiratory syncytial virus infection (disorder)"}]}], "doseNumberPositiveInt": 1}]}, "search": {"mode": "match"}}, {"fullUrl": "https://api.service.nhs.uk/immunisation-fhir-api/Immunization/e1e10dc6-aaca-41dc-aa22-ea9484d253b3", "resource": {"resourceType": "Immunization", "id": "e1e10dc6-aaca-41dc-aa22-ea9484d253b3", "extension": [{"url": "https://fhir.hl7.org.uk/StructureDefinition/Extension-UKCore-VaccinationProcedure", "valueCodeableConcept": {"coding": [{"system": "http://snomed.info/sct", "code": "1324681000000101", "display": "Administration of first dose of severe acute respiratory syndrome coronavirus 2 vaccine (procedure)"}]}}], "identifier": [{"use": "official", "system": "https://supplierABC/identifiers/vacc", "value": "b3df6474-ed75-46d2-a3bd-3ceff23f3164"}], "status": "completed", "vaccineCode": {"coding": [{"system": "http://snomed.info/sct", "code": "39114911000001105", "display": "COVID-19 Vaccine Vaxzevria (ChAdOx1 S [recombinant]) not less than 2.5x100,000,000 infectious units/0.5ml dose suspension for injection multidose vials (AstraZeneca UK Ltd) (product)"}]}, "patient": {"reference": "urn:uuid:e40603e8-3097-4bda-bcfd-39a57311dab6", "type": "Patient",
+            "identifier": {"system": "https://fhir.nhs.uk/Id/nhs-number", "value": "9693632109"}}, "occurrenceDateTime": "2021-02-07T13:28:17+00:00", "recorded": "2021-02-07T13:28:17+00:00", "primarySource": true, "location": {"type": "Location", "identifier": {"system": "https://fhir.nhs.uk/Id/ods-organization-code", "value": "X99999"}}, "manufacturer": {"display": "AstraZeneca Ltd"}, "lotNumber": "4120Z001", "expirationDate": "2021-07-02", "site": {"coding": [{"system": "http://snomed.info/sct", "code": "368208006", "display": "Left upper arm structure (body structure)"}]}, "route": {"coding": [{"system": "http://snomed.info/sct", "code": "78421000", "display": "Intramuscular route (qualifier value)"}]}, "doseQuantity": {"value": 0.5, "unit": "milliliter", "system": "http://unitsofmeasure.org", "code": "ml"}, "performer": [{"actor": {"type": "Organization", "identifier": {"system": "https://fhir.hl7.org.uk/Id/urn-school-number", "value": "B0C4P"}}}], "reasonCode": [{"coding": [{"system": "http://snomed.info/sct", "code": "443684005"}]}], "protocolApplied": [{"targetDisease": [{"coding": [{"system": "http://snomed.info/sct", "code": "55735004", "display": "Respiratory syncytial virus infection (disorder)"}]}], "doseNumberPositiveInt": 1}]}, "search": {"mode": "match"}}, {"fullUrl": "urn:uuid:e40603e8-3097-4bda-bcfd-39a57311dab6", "resource": {"resourceType": "Patient", "id": "9693632109",
+            "identifier": [{"system": "https://fhir.nhs.uk/Id/nhs-number", "value": "9693632109"}
+            ]},
+        "search": {"mode": "include"}}],
+        "total": 2
+    }

backend/src/fhir_service.py

@@ -288,7 +288,8 @@ def search_immunizations(
         Finds all instances of Immunization(s) for a specified patient which are for the specified vaccine type(s).
         Bundles the resources with the relevant patient resource and returns the bundle.
         """
-        logger.info("SAW: search_immunizations for nhs_number: %s, vaccine_types: %s, date_from: %s, date_to: %s",)
+        logger.info("SAW: search_immunizations for nhs_number: %s, vaccine_types: %s, date_from: %s, date_to: %s", 
+                     nhs_number, vaccine_types, date_from, date_to)
         # TODO: is disease type a mandatory field? (I assumed it is)
         #  i.e. Should we provide a search option for getting Patient's entire imms history?
 
@@ -332,6 +333,10 @@ def search_immunizations(
 
 
         logger.info("SAW: entries created for bundle: %d", len(entries))
+        
+        for entry in entries:
+            logger.debug("SAW: entry: %s", entry.resource.json(indent=2))                       
+        
         # Add patient resource if there is at least one immunization resource
         if len(resources) > 0:
             entries.append(

backend/src/search_imms_handler.py

@@ -62,7 +62,11 @@ def search_imms(event: events.APIGatewayProxyEventV1, controller: FhirController
         logger.info("SAW: Searching by immunization")
         response = controller.search_immunizations(event)
 
+        logger.info("SAW: Searched by immunization")
+
         result_json = json.dumps(response)
+        logger.info("SAW: Search result: %s", result_json)        
+        logger.info("SAW: Search result size: %d bytes", len(result_json.encode("utf-8")))
         result_size = len(result_json.encode("utf-8"))
 
         if result_size > 6 * 1024 * 1024:
@@ -73,6 +77,7 @@ def search_imms(event: events.APIGatewayProxyEventV1, controller: FhirController
                 diagnostics="Search returned too many results. Please narrow down the search",
             )
             return FhirController.create_response(400, exp_error)
+        logger.info("SAW: return response with size: %d bytes", result_size)
         return response
     except Exception:  # pylint: disable = broad-exception-caught
         logger.exception("Unhandled exception")