New simulation scripts (RS, Passive Viewing, DMS)

Author: Antonio Ulloa

analysis/compute_BOLD_balloon_model.py

@@ -79,10 +79,10 @@
 from scipy.integrate import odeint
 
 # define the name of the input file where the synaptic activities are stored
-SYN_file  = 'synaptic_in_TVB_ROI.npy'
+SYN_file  = 'synaptic_in_ROI.npy'
 
 # define the name of the output file where the BOLD timeseries will be stored
-BOLD_file = 'bold_balloon_TVB_ROI.npy'
+BOLD_file = 'bold_balloon_in_ROI.npy'
 
 # define balloon model parameters...
 tau_s = 1.5           # rate constant of vasodilatory signal decay in seconds

visual_model/subject_12/output.DMSTask/log.txt

@@ -0,0 +1,9 @@
+* Simulation Start Time: Fri Dec  9 16:15:13 2016
+* Simulation End Time: Sat Dec 10 00:19:41 2016
+* Simulation duration (timesteps): 39600
+* Model description used: /Users/Antonio/Documents/NEURALBYTES/NIHPROJECT2/lsnm_in_python/visual_model/model.txt
+* Weights list used: /Users/Antonio/Documents/NEURALBYTES/NIHPROJECT2/lsnm_in_python/visual_model/subject_12/weightslist.txt
+* Neural net used: 
+* Simulation script used: /Users/Antonio/Documents/NEURALBYTES/NIHPROJECT2/lsnm_in_python/visual_model/script_DMS_198_seconds.py
+* Were weights changed to generate a new subject? NO
+* Was TVB Connectome used in the simulation? YES

visual_model/subject_12/output.DMSTask/neuralnet.json

@@ -0,0 +1,9 @@
+* Simulation Start Time: Fri Dec  9 06:22:05 2016
+* Simulation End Time: Fri Dec  9 16:08:11 2016
+* Simulation duration (timesteps): 39600
+* Model description used: /Users/Antonio/Documents/NEURALBYTES/NIHPROJECT2/lsnm_in_python/visual_model/model.txt
+* Weights list used: /Users/Antonio/Documents/NEURALBYTES/NIHPROJECT2/lsnm_in_python/visual_model/subject_12/weightslist.txt
+* Neural net used: 
+* Simulation script used: /Users/Antonio/Documents/NEURALBYTES/NIHPROJECT2/lsnm_in_python/visual_model/script_passive_viewing_198_seconds.py
+* Were weights changed to generate a new subject? NO
+* Was TVB Connectome used in the simulation? YES

visual_model/subject_12/output.PassiveViewing/log.txt

@@ -0,0 +1,9 @@
+* Simulation Start Time: Sat Dec 10 06:59:14 2016
+* Simulation End Time: Sat Dec 10 14:43:05 2016
+* Simulation duration (timesteps): 39600
+* Model description used: /Users/Antonio/Documents/NEURALBYTES/NIHPROJECT2/lsnm_in_python/visual_model/model.txt
+* Weights list used: /Users/Antonio/Documents/NEURALBYTES/NIHPROJECT2/lsnm_in_python/visual_model/subject_13/weightslist.txt
+* Neural net used: 
+* Simulation script used: /Users/Antonio/Documents/NEURALBYTES/NIHPROJECT2/lsnm_in_python/visual_model/script_DMS_198_seconds.py
+* Were weights changed to generate a new subject? NO
+* Was TVB Connectome used in the simulation? YES

visual_model/subject_13/output.DMSTask/log.txt

@@ -0,0 +1,9 @@
+* Simulation Start Time: Sat Dec 10 14:45:05 2016
+* Simulation End Time: Sat Dec 10 21:49:54 2016
+* Simulation duration (timesteps): 39600
+* Model description used: /Users/Antonio/Documents/NEURALBYTES/NIHPROJECT2/lsnm_in_python/visual_model/model.txt
+* Weights list used: /Users/Antonio/Documents/NEURALBYTES/NIHPROJECT2/lsnm_in_python/visual_model/subject_14/weightslist.txt
+* Neural net used: 
+* Simulation script used: /Users/Antonio/Documents/NEURALBYTES/NIHPROJECT2/lsnm_in_python/visual_model/script_DMS_198_seconds.py
+* Were weights changed to generate a new subject? NO
+* Was TVB Connectome used in the simulation? YES

visual_model/subject_13/output.DMSTask/neuralnet.json

@@ -0,0 +1,9 @@
+* Simulation Start Time: Sat Dec 10 22:39:54 2016
+* Simulation End Time: Sun Dec 11 06:10:59 2016
+* Simulation duration (timesteps): 39600
+* Model description used: /Users/Antonio/Documents/NEURALBYTES/NIHPROJECT2/lsnm_in_python/visual_model/model.txt
+* Weights list used: /Users/Antonio/Documents/NEURALBYTES/NIHPROJECT2/lsnm_in_python/visual_model/subject_15/weightslist.txt
+* Neural net used: 
+* Simulation script used: /Users/Antonio/Documents/NEURALBYTES/NIHPROJECT2/lsnm_in_python/visual_model/script_DMS_198_seconds.py
+* Were weights changed to generate a new subject? NO
+* Was TVB Connectome used in the simulation? YES