exploring guidance from Mikyung, and Frank

Author: ilaflott

build.sh

@@ -1,27 +1,53 @@
-echo 'builindg FRE-NCtools conda package...'
+#!/bin/bash
+
+set -ex
+
+which nc-config
+which nf-config
+
+echo 'building FRE-NCtools conda package...'
 echo "SRC_DIR / Build directory is:"
 pwd
 echo "Contents of SRC_DIR / Build directory are:"
 ls
 
-export LD_LIBRARY_PATH=${PREFIX}/lib
 echo "PRE CONFIGURATION::"
 echo ""
-echo ""
 echo "PATH is:"
 echo $PATH
+echo "RPATH is:"
+echo $RPATH
 echo "LD_LIBRARY_PATH is:"
 echo $LD_LIBRARY_PATH
+echo "DYLD_LIBRARY_PATH is:"
+echo $DYLD_LIBRARY_PATH
 echo ""
+echo ""
+echo "CC is:"
+echo $CC
+echo "CF is:"
+echo $CF
+echo "CFLAGS is:"
+echo $CFLAGS
+echo "FCFLAGS is:"
+echo $FCFLAGS
+echo "LDFLAGS is:"
+echo $LDFLAGS
+
+#CC=
+#FC=
+#CFLAGS=
+#FCFLAGS=
+#LDFLAGS=#
+#LD_LIBRARY_PATH=${PREFIX}/lib
 
 ## this is sufficient
-autoreconf -i
+autoreconf -iv
 ./configure --prefix=$PREFIX || cat config.log
 #./configure --prefix=$PREFIX --with-mpi || cat config.log
 #./configure --prefix=$PREFIX --enable-quad-precision || cat config.log
 #./configure --prefix=$PREFIX --enable-quad-precision --with-mpi || cat config.log
 
-export LD_LIBRARY_PATH=${PREFIX}/lib
 echo "POST CONFIGURATION::"
 echo ""
 echo ""
@@ -33,11 +59,12 @@ echo ""
 
 echo "compiling/building"
 make
+
 echo "installing into $PREFIX"
 make install
 
 ### to test, build-dir option, ala README
-#autoreconf -i
+#autoreconf -iv
 #mkdir build && cd build
 #../configure --prefix=$PREFIX || cat config.log
 ##../configure --prefix=$PREFIX --with-mpi || cat config.log

environment.yml

@@ -3,18 +3,20 @@ channels:
   - conda-forge
   - noaa-gfdl
 dependencies:
-  - conda-forge::nco
-  - conda-forge::libnetcdf
-  - conda-forge::netcdf-fortran
-  - conda-forge::mpich
-  - conda-forge::gfortran
+  - conda-forge::zlib-ng==2.2.1
+  - conda-forge::mpich==4.2.3
+  - conda-forge::gls==2.8
+  - conda-forge::udunits==2.2.28
+  - conda-forge::netcdf-fortran==4.6.1
+  - conda-forge::gcc==13.3.0
+  - conda-forge::hdf5=1.14.*=mpi*
+  - conda-forge::libnetcdf==4.9.2
+  - conda-forge::nco==5.2.4
   - conda-forge::python>2
-  - conda-forge::numpy
+  - conda-forge::numpy<2
   - conda-forge::pytest
   - conda-forge::libtool
   - conda-forge::autoconf
   - conda-forge::automake
-  - conda-forge::hdf5=1.14.*=mpi*
-  - conda-forge::openmp
   - conda-forge::tcsh
   - conda-forge::which

meta.yaml

@@ -10,10 +10,15 @@ build:
 
 requirements:
   host:
-    - conda-forge::nco
-    - conda-forge::libnetcdf
-    - conda-forge::netcdf-fortran
-    - conda-forge::gfortran
+    - conda-forge::zlib-ng==2.2.1
+    - conda-forge::mpich==4.2.3
+    - conda-forge::gls==2.8
+    - conda-forge::udunits==2.2.28
+    - conda-forge::netcdf-fortran==4.6.1
+    - conda-forge::gcc==13.3.0
+    - conda-forge::hdf5=1.14.*=mpi*
+    - conda-forge::libnetcdf==4.9.2
+    - conda-forge::nco==5.2.4
     - conda-forge::python>2
     - conda-forge::numpy<2
     - conda-forge::pytest
@@ -22,16 +27,18 @@ requirements:
     - conda-forge::automake
     - conda-forge::tcsh
     - conda-forge::which
-    - conda-forge::libgcc
-    - conda-forge::libstdcxx-ng
-    - conda-forge::mpich
-    - conda-forge::hdf5=1.14.*=mpi*
+
 
   build:
-    - conda-forge::nco
-    - conda-forge::libnetcdf
-    - conda-forge::netcdf-fortran
-    - conda-forge::gfortran
+    - conda-forge::zlib-ng==2.2.1
+    - conda-forge::mpich==4.2.3
+    - conda-forge::gls==2.8
+    - conda-forge::udunits==2.2.28
+    - conda-forge::netcdf-fortran==4.6.1
+    - conda-forge::gcc==13.3.0
+    - conda-forge::hdf5=1.14.*=mpi*
+    - conda-forge::libnetcdf==4.9.2
+    - conda-forge::nco==5.2.4
     - conda-forge::python>2
     - conda-forge::numpy<2
     - conda-forge::pytest
@@ -40,16 +47,17 @@ requirements:
     - conda-forge::automake
     - conda-forge::tcsh
     - conda-forge::which
-    - conda-forge::libgcc
-    - conda-forge::libstdcxx-ng
-    - conda-forge::mpich
-    - conda-forge::hdf5=1.14.*=mpi*
 
   run:
-    - conda-forge::nco
-    - conda-forge::libnetcdf
-    - conda-forge::netcdf-fortran
-    - conda-forge::gfortran
+    - conda-forge::zlib-ng==2.2.1
+    - conda-forge::mpich==4.2.3
+    - conda-forge::gls==2.8
+    - conda-forge::udunits==2.2.28
+    - conda-forge::netcdf-fortran==4.6.1
+    - conda-forge::gcc==13.3.0
+    - conda-forge::hdf5=1.14.*=mpi*
+    - conda-forge::libnetcdf==4.9.2
+    - conda-forge::nco==5.2.4
     - conda-forge::python>2
     - conda-forge::numpy<2
     - conda-forge::pytest
@@ -58,16 +66,17 @@ requirements:
     - conda-forge::automake
     - conda-forge::tcsh
     - conda-forge::which
-    - conda-forge::libgcc
-    - conda-forge::libstdcxx-ng
-    - conda-forge::mpich
-    - conda-forge::hdf5=1.14.*=mpi*
 
   test:
-    - conda-forge::nco
-    - conda-forge::libnetcdf
-    - conda-forge::netcdf-fortran
-    - conda-forge::gfortran
+    - conda-forge::zlib-ng==2.2.1
+    - conda-forge::mpich==4.2.3
+    - conda-forge::gls==2.8
+    - conda-forge::udunits==2.2.28
+    - conda-forge::netcdf-fortran==4.6.1
+    - conda-forge::gcc==13.3.0
+    - conda-forge::hdf5=1.14.*=mpi*
+    - conda-forge::libnetcdf==4.9.2
+    - conda-forge::nco==5.2.4
     - conda-forge::python>2
     - conda-forge::numpy<2
     - conda-forge::pytest
@@ -76,10 +85,7 @@ requirements:
     - conda-forge::automake
     - conda-forge::tcsh
     - conda-forge::which
-    - conda-forge::libgcc
-    - conda-forge::libstdcxx-ng
-    - conda-forge::mpich
-    - conda-forge::hdf5=1.14.*=mpi*
+
 
 test:
   source_files: