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Merge pull request #257 from NYU-RTS/mdweisner-ood-2
Mdweisner ood url fix
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docs/hpc/09_ood/03_Dask.mdx

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[Dask](https://docs.dask.org/en/stable/) is a Python library for parallel and distributed computing.
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## Getting Started
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You can run Dask in a Jupyter Notebook in OOD by going to the URL [ood.hpc.nyu.edu](http://ood.hpc.nyu.edu) in your browser and selecting `DS-GA.1004 - Jupyter Dask` from the `Interactive Apps` pull-down menu at the top of the page. Once you've used it and other interactive apps they'll show up on your home screen under the `Recently Used Apps` header.
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You can run Dask in a Jupyter Notebook in OOD by going to the URL [ood.torch.hpc.nyu.edu](http://ood.torch.hpc.nyu.edu) in your browser and selecting `DS-GA.1004 - Jupyter Dask` from the `Interactive Apps` pull-down menu at the top of the page. Once you've used it and other interactive apps they'll show up on your home screen under the `Recently Used Apps` header.
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:::note
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Be aware that when you start from `Recently Used Apps` it will start with the same configuration that you used previously. If you'd like to configure your Dask session differently, you'll need to select it from the menu.
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Result (Dask): 50.010815178612596
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Pandas took 9.641847610473633 seconds to compute the mean across 5 files.
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Result (Pandas): 50.01081517861258
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```
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```

docs/hpc/09_ood/04_Desktop.mdx

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You can get a basic desktop interface to HPC resources.
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## Getting Started
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You can get a desktop in OOD by going to the URL [ood.hpc.nyu.edu](http://ood.hpc.nyu.edu) in your browser and selecting `Desktop` from the `Interactive Apps` pull-down menu at the top of the page. Once you've used it and other interactive apps they'll show up on your home screen under the `Recently Used Apps` header.
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You can get a desktop in OOD by going to the URL [ood.torch.hpc.nyu.edu](http://ood.torch.hpc.nyu.edu) in your browser and selecting `Desktop` from the `Interactive Apps` pull-down menu at the top of the page. Once you've used it and other interactive apps they'll show up on your home screen under the `Recently Used Apps` header.
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:::note
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Be aware that when you start from `Recently Used Apps` it will start with the same configuration that you used previously. If you'd like to configure your Desktop session differently, you'll need to select it from the menu.
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![Pre-launch Desktop OOD](./static/ood_desktop_prelaunch.png)
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Please click the `Launch Desktop` button and a Desktop window will open.
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Please click the `Launch Desktop` button and a Desktop window will open.

docs/hpc/09_ood/05_igv.mdx

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- [Tutorial Videos](https://www.youtube.com/channel/UCb5W5WqauDOwubZHb-IA_rA)
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## Getting Started
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You can run IGV in OOD by going to the URL [ood.hpc.nyu.edu](http://ood.hpc.nyu.edu) in your browser and selecting `IGV` from the `Interactive Apps` pull-down menu at the top of the page. Once you've used it and other interactive apps they'll show up on your home screen under the `Recently Used Apps` header.
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You can run IGV in OOD by going to the URL [ood.torch.hpc.nyu.edu](http://ood.torch.hpc.nyu.edu) in your browser and selecting `IGV` from the `Interactive Apps` pull-down menu at the top of the page. Once you've used it and other interactive apps they'll show up on your home screen under the `Recently Used Apps` header.
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:::note
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Be aware that when you start from `Recently Used Apps` it will start with the same configuration that you used previously. If you'd like to configure your IGV session differently, you'll need to select it from the menu.

docs/hpc/09_ood/07_jupyter_with_conda_singularity.mdx

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Update the `"<Your NetID>"` to your own NetID without the `"<>"` symbols.
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### Launch an OOD Jupyter Notebook
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Go to [https://ood.hpc.nyu.edu](https://ood.hpc.nyu.edu) <br />
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Go to [https://ood.torch.hpc.nyu.edu](https://ood.torch.hpc.nyu.edu) <br />
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and select Jupyter Notebook from the Interactive Apps pull-down menu:
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![OOD Launch](./static/start_jupyter.png)

docs/hpc/09_ood/08_matlab_proxy.mdx

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# Matlab-Proxy in OOD
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## Getting Started
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You can run Matlab-Proxy in OOD by going to the URL [ood.hpc.nyu.edu](http://ood.hpc.nyu.edu) in your browser and selecting `MATLAB` from the `Interactive Apps` pull-down menu at the top of the page. Once you've used it and other interactive apps they'll show up on your home screen under the `Recently Used Apps` header.
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You can run Matlab-Proxy in OOD by going to the URL [ood.torch.hpc.nyu.edu](http://ood.torch.hpc.nyu.edu) in your browser and selecting `MATLAB` from the `Interactive Apps` pull-down menu at the top of the page. Once you've used it and other interactive apps they'll show up on your home screen under the `Recently Used Apps` header.
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:::note
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Be aware that when you start from `Recently Used Apps` it will start with the same configuration that you used previously. If you'd like to configure your Matlab session differently, you'll need to select it from the menu.
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![Pre-launch matlab OOD](./static/ood_matlab_prelaunch.png)
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Then after you hit the `Connect to Matlab` button you'll have the familiar Matlab Desktop to use.
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Then after you hit the `Connect to Matlab` button you'll have the familiar Matlab Desktop to use.

docs/hpc/09_ood/09_RStudio.mdx

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## Getting Started
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You can run RStudio in OOD by going to the URL [ood.hpc.nyu.edu](http://ood.hpc.nyu.edu) in your browser and selecting `RStudio Server` from the `Interactive Apps` pull-down menu at the top of the page. Once you've used it and other interactive apps they'll show up on your home screen under the `Recently Used Apps` header.
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You can run RStudio in OOD by going to the URL [ood.torch.hpc.nyu.edu](http://ood.torch.hpc.nyu.edu) in your browser and selecting `RStudio Server` from the `Interactive Apps` pull-down menu at the top of the page. Once you've used it and other interactive apps they'll show up on your home screen under the `Recently Used Apps` header.
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Be aware that when you start from `Recently Used Apps` it will start with the same configuration that you used previously. If you'd like to configure your RStudio session differently, you'll need to select it from the menu.

docs/hpc/09_ood/10_Spark.mdx

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# Spark Standalone Cluster with Jupyter Notebook in OOD
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## Getting Started
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You can run a Spark Standalone Cluster with Jupyter Notebook in OOD by going to the URL [ood.hpc.nyu.edu](http://ood.hpc.nyu.edu) in your browser and selecting `Spark Standalone Cluster` from the `Interactive Apps` pull-down menu at the top of the page. Once you've used it and other interactive apps they'll show up on your home screen under the `Recently Used Apps` header.
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You can run a Spark Standalone Cluster with Jupyter Notebook in OOD by going to the URL [ood.torch.hpc.nyu.edu](http://ood.torch.hpc.nyu.edu) in your browser and selecting `Spark Standalone Cluster` from the `Interactive Apps` pull-down menu at the top of the page. Once you've used it and other interactive apps they'll show up on your home screen under the `Recently Used Apps` header.
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:::note
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Be aware that when you start from `Recently Used Apps` it will start with the same configuration that you used previously. If you'd like to configure your Spark Standalone Cluster with Jupyter Notebook session differently, you'll need to select it from the menu.

docs/hpc/09_ood/11_Stata.mdx

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# Stata in OOD
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## Getting Started
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You can run Stata in OOD by going to the URL [ood.hpc.nyu.edu](http://ood.hpc.nyu.edu) in your browser and selecting `STATA` from the `Interactive Apps` pull-down menu at the top of the page. Once you've used it and other interactive apps they'll show up on your home screen under the `Recently Used Apps` header.
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You can run Stata in OOD by going to the URL [ood.torch.hpc.nyu.edu](http://ood.torch.hpc.nyu.edu) in your browser and selecting `STATA` from the `Interactive Apps` pull-down menu at the top of the page. Once you've used it and other interactive apps they'll show up on your home screen under the `Recently Used Apps` header.
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Be aware that when you start from `Recently Used Apps` it will start with the same configuration that you used previously. If you'd like to configure your NGLView Jupyter Notebook session differently, you'll need to select it from the menu.

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