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Merge remote-tracking branch 'upstream/develop' into test-dnanasumors
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#/
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# @license Apache-2.0
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#
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# Copyright (c) 2024 The Stdlib Authors.
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#
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# Licensed under the Apache License, Version 2.0 (the "License");
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# you may not use this file except in compliance with the License.
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# You may obtain a copy of the License at
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#
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# http://www.apache.org/licenses/LICENSE-2.0
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#
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# Unless required by applicable law or agreed to in writing, software
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# distributed under the License is distributed on an "AS IS" BASIS,
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# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
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# See the License for the specific language governing permissions and
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# limitations under the License.
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#/
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# Workflow name:
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name: cleanup_coverage
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# Workflow triggers:
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on:
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# Trigger the workflow when a pull request is closed (e.g., merged or closed without merging):
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pull_request_target:
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types:
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- closed
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# Workflow jobs:
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jobs:
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# Define a job to perform coverage cleanup...
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cleanup:
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# Define a display name:
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name: 'Cleanup coverage'
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# Define the type of virtual host machine:
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runs-on: ubuntu-latest
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steps:
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# Delete the 'pr-<number>' branch from the 'stdlib-js/www-test-code-coverage' repository:
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- name: 'Delete coverage branch for PR'
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env:
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REPO_GITHUB_TOKEN: ${{ secrets.REPO_GITHUB_TOKEN }}
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PR_NUMBER: ${{ github.event.pull_request.number }}
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run: |
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curl -X DELETE -H "Authorization: token $REPO_GITHUB_TOKEN" \
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"https://api.github.com/repos/stdlib-js/www-test-code-coverage/git/refs/heads/pr-${PR_NUMBER}" \
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|| echo "Branch pr-${PR_NUMBER} does not exist or could not be deleted."
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# Find and update the '## Coverage Report' comment in the PR
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- name: 'Update coverage comment in PR'
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# Pin action to full length commit SHA
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uses: actions/github-script@60a0d83039c74a4aee543508d2ffcb1c3799cdea # v7.0.1
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with:
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github-token: ${{ secrets.CHATBOT_GITHUB_TOKEN }}
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script: |
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const prNumber = context.payload.pull_request.number;
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const { data: comments } = await github.rest.issues.listComments({
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owner: context.repo.owner,
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repo: context.repo.repo,
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issue_number: prNumber,
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});
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const coverageComment = comments.find( comment => comment.body && comment.body.includes( '## Coverage Report' ) );
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if ( coverageComment ) {
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// Replace URLs with plain text in the coverage report comment body:
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const updatedBody = coverageComment.body.replace( /<a href="[^"]+">([^<]+)<\/a>/g, '$1' );
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await github.rest.issues.updateComment({
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owner: context.repo.owner,
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repo: context.repo.repo,
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comment_id: coverageComment.id,
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body: updatedBody,
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});
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} else {
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console.log( 'No Coverage Report comment found.' );
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}

.github/workflows/lint_autofix.yml

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# Allow the workflow to be triggered by other workflows
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workflow_call:
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# Define the input parameters for the workflow:
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inputs:
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pull_request_number:
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description: 'PR number'
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required: true
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type: number
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# Define the secrets accessible by the workflow:
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secrets:
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STDLIB_BOT_GITHUB_TOKEN:
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description: 'GitHub token for stdlb-bot'
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required: true
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REPO_GITHUB_TOKEN:
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description: 'GitHub token for accessing the repository'
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required: true
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STDLIB_BOT_GPG_PRIVATE_KEY:
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description: 'GPG private key for stdlb-bot'
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required: true
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STDLIB_BOT_GPG_PASSPHRASE:
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description: 'GPG passphrase for stdlb-bot'
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required: true
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inputs:
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pull_request_number:
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description: 'PR number'
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required: true
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type: number
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# Define the secrets accessible by the workflow:
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secrets:
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STDLIB_BOT_GITHUB_TOKEN:
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description: 'GitHub token for stdlb-bot'
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required: true
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REPO_GITHUB_TOKEN:
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description: 'GitHub token for accessing the repository'
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required: true
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STDLIB_BOT_GPG_PRIVATE_KEY:
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description: 'GPG private key for stdlb-bot'
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required: true
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STDLIB_BOT_GPG_PASSPHRASE:
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description: 'GPG passphrase for stdlb-bot'
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required: true
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# Workflow jobs:
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jobs:
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#/
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# @license Apache-2.0
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#
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# Copyright (c) 2024 The Stdlib Authors.
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#
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# Licensed under the Apache License, Version 2.0 (the "License");
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# you may not use this file except in compliance with the License.
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# You may obtain a copy of the License at
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#
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# http://www.apache.org/licenses/LICENSE-2.0
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#
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# Unless required by applicable law or agreed to in writing, software
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# distributed under the License is distributed on an "AS IS" BASIS,
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# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
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# See the License for the specific language governing permissions and
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# limitations under the License.
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#/
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# Workflow name:
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name: 'lint_copyright_years'
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# Workflow triggers:
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on:
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pull_request:
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types: [opened, synchronize, reopened]
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# Global permissions:
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permissions:
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# Allow read-only access to the repository contents:
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contents: read
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# Workflow jobs:
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jobs:
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# Define a job for linting copyright years in newly added files:
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lint:
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name: 'Lint Copyright Years'
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runs-on: ubuntu-latest
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steps:
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# Checkout the repository:
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- name: 'Checkout repository'
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# Pin action to full length commit SHA
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uses: actions/checkout@692973e3d937129bcbf40652eb9f2f61becf3332 # v4.1.7
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with:
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# Specify whether to remove untracked files before checking out the repository:
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clean: true
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# Limit clone depth to the last 1000 commits:
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fetch-depth: 100
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# Specify whether to download Git-LFS files:
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lfs: false
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timeout-minutes: 10
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# Get list of newly added files:
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- name: 'Get list of newly added files'
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id: added-files
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run: |
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page=1
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files=""
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while true; do
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new_files=$(curl -s \
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-H "Accept: application/vnd.github.v3+json" \
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-H "Authorization: Bearer ${{ secrets.GITHUB_TOKEN }}" \
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"${{ github.api_url }}/repos/${{ github.repository }}/pulls/${{ github.event.pull_request.number }}/files?page=$page&per_page=100" \
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| jq -r '.[] | select(.status == "added") | .filename')
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if [ -z "$new_files" ]; then
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break
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fi
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files="$files $new_files"
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page=$((page+1))
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done
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files=$(echo "$files" | tr '\n' ' ' | sed 's/^ //;s/ $//')
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echo "files=${files}" >> $GITHUB_OUTPUT
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# Check copyright years in newly added files:
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- name: 'Check copyright years'
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run: |
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current_year=$(date +"%Y")
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files="${{ steps.added-files.outputs.files }}"
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exit_code=0
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echo "## 📄 Copyright Year Check Results" >> $GITHUB_STEP_SUMMARY
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echo "_Only newly added files are checked for the current year in the copyright notice._" >> $GITHUB_STEP_SUMMARY
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echo "" >> $GITHUB_STEP_SUMMARY
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if [[ -z "$files" ]]; then
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echo "No newly added files to check."
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echo "No newly added files to check." >> $GITHUB_STEP_SUMMARY
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exit 0
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fi
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for file in $files; do
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if [[ ! -f "$file" ]]; then
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continue
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fi
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# Check if file contains stdlib copyright notice:
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year=$(grep -o 'Copyright (c) [0-9]\{4\} The Stdlib Authors\.' "$file" | sed -E 's/^Copyright \(c\) ([0-9]{4}) The Stdlib Authors\./\1/' || true)
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if [[ -n "$year" ]]; then
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if [[ "$year" == "$current_year" ]]; then
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echo "✅ $file: Correct year $year"
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echo "- ✅ \`$file\`: Year is correct (**$year**)" >> $GITHUB_STEP_SUMMARY
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else
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echo "❌ $file: Expected $current_year, found $year"
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echo "- ❌ **Error**: \`$file\` — Expected year **$current_year**, found **$year**" >> $GITHUB_STEP_SUMMARY
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exit_code=1
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fi
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else
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echo "⚠️ $file: No copyright notice found"
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echo "- ⚠️ No copyright notice found in \`$file\`" >> $GITHUB_STEP_SUMMARY
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fi
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done
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exit $exit_code
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#/
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# @license Apache-2.0
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#
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# Copyright (c) 2024 The Stdlib Authors.
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#
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# Licensed under the Apache License, Version 2.0 (the "License");
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# you may not use this file except in compliance with the License.
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# You may obtain a copy of the License at
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#
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# http://www.apache.org/licenses/LICENSE-2.0
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#
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# Unless required by applicable law or agreed to in writing, software
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# distributed under the License is distributed on an "AS IS" BASIS,
14+
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
15+
# See the License for the specific language governing permissions and
16+
# limitations under the License.
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#/
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# Workflow name:
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name: pr_merge_develop
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# Workflow triggers:
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on:
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# Allow the workflow to be triggered by other workflows
26+
workflow_call:
27+
# Define the input parameters for the workflow:
28+
inputs:
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pull_request_number:
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description: 'PR number'
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required: true
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type: number
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# Define the secrets accessible by the workflow:
35+
secrets:
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STDLIB_BOT_GITHUB_TOKEN:
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description: 'GitHub token for stdlb-bot'
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required: true
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REPO_GITHUB_TOKEN:
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description: 'GitHub token for accessing the repository'
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required: true
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STDLIB_BOT_GPG_PRIVATE_KEY:
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description: 'GPG private key for stdlb-bot'
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required: true
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STDLIB_BOT_GPG_PASSPHRASE:
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description: 'GPG passphrase for stdlb-bot'
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required: true
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# Workflow jobs:
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jobs:
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merge:
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# Define a display name:
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name: 'Merge Develop into PR Branch'
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# Define the type of virtual host machine:
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runs-on: ubuntu-latest
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# Define the job's steps:
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steps:
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# Get PR details:
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- name: 'Get PR details'
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id: pr-details
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run: |
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pr_response=$(curl -s \
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-H "Accept: application/vnd.github.v3+json" \
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-H "Authorization: Bearer ${{ secrets.STDLIB_BOT_GITHUB_TOKEN }}" \
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"https://api.github.com/repos/stdlib-js/stdlib/pulls/${{ inputs.pull_request_number }}")
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# Escape control characters:
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pr_response=$(echo "$pr_response" | tr -d '\000-\031')
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# Extract the needed details:
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pr_branch=$(echo "$pr_response" | jq -r '.head.ref')
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pr_repo_full_name=$(echo "$pr_response" | jq -r '.head.repo.full_name')
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echo "branch=$pr_branch" >> $GITHUB_OUTPUT
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echo "repository=$pr_repo_full_name" >> $GITHUB_OUTPUT
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# Checkout the repository:
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- name: 'Checkout repository'
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uses: actions/checkout@692973e3d937129bcbf40652eb9f2f61becf3332 # v4.1.7
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with:
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ref: ${{ steps.pr-details.outputs.branch }}
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repository: ${{ steps.pr-details.outputs.repository }}
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token: ${{ secrets.REPO_GITHUB_TOKEN }}
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fetch-depth: 0
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# Disable Git hooks:
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- name: 'Disable Git hooks'
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run: |
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rm -rf .git/hooks
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# Import GPG key to sign commits:
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- name: 'Import GPG key to sign commits'
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# Pin action to full length commit SHA
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uses: crazy-max/ghaction-import-gpg@cb9bde2e2525e640591a934b1fd28eef1dcaf5e5 # v6.2.0
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with:
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gpg_private_key: ${{ secrets.STDLIB_BOT_GPG_PRIVATE_KEY }}
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passphrase: ${{ secrets.STDLIB_BOT_GPG_PASSPHRASE }}
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git_user_signingkey: true
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git_commit_gpgsign: true
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# Merge the develop branch into the PR branch:
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- name: 'Merge develop branch'
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env:
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REPO_GITHUB_TOKEN: ${{ secrets.REPO_GITHUB_TOKEN }}
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USER_NAME: stdlb-bot
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BRANCH_NAME: ${{ steps.pr-details.outputs.branch }}
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REPO_NAME: ${{ steps.pr-details.outputs.repository }}
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run: |
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# Configure Git user:
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git config --local user.email "[email protected]"
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git config --local user.name "stdlib-bot"
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# Add upstream remote pointing to the original repository:
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git remote add upstream https://github.com/stdlib-js/stdlib.git
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# Fetch the develop branch from upstream:
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git fetch upstream develop
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# Merge upstream develop into the current branch:
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git merge upstream/develop --no-edit
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# Push the updated branch back to the forked repository:
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git push "https://$USER_NAME:[email protected]/$REPO_NAME.git" $BRANCH_NAME

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