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Padraig GleesonPadraig Gleeson
Padraig Gleeson
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Padraig Gleeson
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Restructure exercises
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‎Exercises/Exercise2_HBP_Collaboratory.md

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## Run neuronal model on Human Brain Project collaboratory
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## Run neuronal model on Human Brain Project Collaboratory
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This will be an interactive demonstration with the following steps
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- Sign in to HBP Collaboratory
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- Sign in to HBP collaboratory
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- Create new Jupyter notebook
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- Run Neuron/Nest model (from ModelDB?)
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- Run Neuron/Nest models
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‎Exercises/Exercise3_AllenCell_on_NSG_via_OSB.md

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## Run Allen Institute cell model on OSB on NSG and download the results.
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- Compare it to data directly from Allen (quantitatively using Elephant).
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This will be an interactive demonstration with the following steps
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- Compare it to data directly from Allen.
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- Compare to equivalent cells in NeuroElectro
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- Compare to equivalent cells in NeuroElectro.
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‎Exercises/Exercise4_Data_analysis.md

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‎Exercises/Exercise4_NeoPyNNJupyter.md

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## Demonstration of Neo/PyNN using Jupyter notebooks
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This demonstration will illustrate the functionality of the multi simulator
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model specification format [PyNN](http://neuralensemble.org/PyNN/) and the data
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storage API [Neo](http://neuralensemble.org/Neo/) through the use of browser based
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[Jupyter notebooks](http://jupyter.org/), as can be run on [Binder](http://mybinder.org/).

‎Exercises/Exercise5_Hippocampal_model_on_NSG.md

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- Download CA1 model
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- Download local copy of CA1 model
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‎Exercises/README.md

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## A number of exercises for participants in this Neuroinformatics tutorial
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## A number of exercises/interactive demonstrations for participants in this Neuroinformatics tutorial
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### Cell morphology from NeuroMorpho.Org visualised on Open Source Brain
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[Follow this exercise](Exercise1_NeuroMorpho_to_OSB.md)
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### Hands on demonstrations
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#### Human Brain Project Collaboratory
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[Summary](Exercise2_HBP_Collaboratory.md)
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#### Run Allen Institute cell model on NSG via OSB
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[Summary](Exercise3_AllenCell_on_NSG_via_OSB.md)
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#### Demonstration of Neo/PyNN using Jupyter notebooks
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[Summary](Exercise4_NeoPyNNJupyter.md)
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### Participant Exercises
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#### Cell morphology from NeuroMorpho.Org visualised on Open Source Brain
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[Follow this exercise](Exercise1_NeuroMorpho_to_OSB.md)
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### Exploring Brain Circuits with the Fruit Fly Brain Observatory
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#### Exploring Brain Circuits with the Fruit Fly Brain Observatory
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[Follow this exercise](Exercise6_FruitFlyBrainObservatory.md)
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### OpenWorm tutorials (introduction to Hodgkin Huxley model etc.)
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#### OpenWorm tutorials (introduction to Hodgkin Huxley model etc.)
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[Follow this exercise](Exercise7_OpenWorm.md)
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