Skip to content

Commit 72ede8b

Browse files
committed
Added slides for Neo, Elephant, PyNN, NeuralEnsemble.org
1 parent a391174 commit 72ede8b

File tree

5 files changed

+31
-5
lines changed

5 files changed

+31
-5
lines changed
Binary file not shown.
Binary file not shown.
Binary file not shown.

Part_1_Resources_for_computational_modellers/README.md

Lines changed: 31 additions & 5 deletions
Original file line numberDiff line numberDiff line change
@@ -99,13 +99,26 @@ community, all browsable in interactive visualizations.
9999

100100
[All slides in this section](https://github.com/NeuralEnsemble/NeuroinformaticsTutorial/blob/master/Part_1_Resources_for_computational_modellers/Part1_3_Analysis_tools.pdf)
101101

102+
103+
#### Neo
104+
105+
Neo is a package for representing electrophysiology data in Python,
106+
together with support for reading a wide range of neurophysiology file formats,
107+
including Spike2, NeuroExplorer, AlphaOmega, Axon, Blackrock, Plexon, Tdt,
108+
and support for writing to a subset of these formats, plus non-proprietary formats including HDF5.
109+
110+
[Website](http://neuralensemble.org/Neo/)
111+
| [Slides](https://github.com/NeuralEnsemble/NeuroinformaticsTutorial/blob/master/Part_1_Resources_for_computational_modellers/3_Analysis_tools/1_Neo.pptx)
112+
113+
102114
#### Elephant
103115

104-
...
116+
Elephant (Electrophysiology Analysis Toolkit) is an open-source, community centered library
117+
for the analysis of electrophysiology data in the Python programming language.
105118

106-
#### Neo
119+
[Website](http://neuralensemble.org/Elephant/)
120+
| [Slides](https://github.com/NeuralEnsemble/NeuroinformaticsTutorial/blob/master/Part_1_Resources_for_computational_modellers/3_Analysis_tools/2_Elephant.pptx)
107121

108-
...
109122

110123

111124
#### NeuronUnit
@@ -235,7 +248,15 @@ and fire cells to complex networks of multicompartmental neurons.
235248

236249
#### PyNN
237250

238-
...
251+
PyNN (pronounced 'pine') is a simulator-independent language for building neuronal network models.
252+
253+
In other words, you can write the code for a model once, using the PyNN API
254+
and the Python programming language, and then run it without modification
255+
on any simulator that PyNN supports (currently NEURON, NEST, and Brian),
256+
and on the SpiNNaker and BrainScaleS neuromorphic hardware systems.
257+
258+
[Website](http://neuralensemble.org/PyNN/)
259+
| [Slides](https://github.com/NeuralEnsemble/NeuroinformaticsTutorial/blob/master/Part_1_Resources_for_computational_modellers/5_Model_sharing/4_PyNN.pptx)
239260

240261
#### Geppetto
241262

@@ -315,7 +336,12 @@ reproducible by anyone, anywhere.
315336

316337
#### NeuralEnsemble
317338

318-
...
339+
NeuralEnsemble is a community-based initiative to promote and co-ordinate
340+
open-source software development in neuroscience.
341+
342+
[Website](http://neuralensemble.org)
343+
[Slides](https://github.com/NeuralEnsemble/NeuroinformaticsTutorial/blob/master/Part_1_Resources_for_computational_modellers/7_Open_source_initiatives/1_NeuralEnsemble.pptx)
344+
319345

320346
#### OpenWorm
321347

0 commit comments

Comments
 (0)