Specify cython better

Author: pgleeson

base/Dockerfile

@@ -11,7 +11,7 @@ ENV LANG=C.UTF-8
 
 RUN apt-get update
 RUN apt-get install -y automake libtool build-essential openmpi-bin libopenmpi-dev git vim  \
-                       wget python3 libpython3-dev libncurses5-dev libreadline-dev libgsl0-dev cython3 \
+                       wget python3 libpython3-dev libncurses5-dev libreadline-dev libgsl0-dev \
                        ipython3 \
                        subversion python3-venv python3-mpi4py cmake zlib1g-dev
 

osb/generateAll.sh

@@ -0,0 +1,16 @@
+set -e
+
+cd ../base
+./generate.sh
+
+cd ../simulation
+./generate.sh
+
+cd ../simulationx
+
+./generate.sh
+
+cd ../osb
+
+./generate.sh
+

simulation/Dockerfile

@@ -17,6 +17,7 @@ ENV BRIAN2_VER=2.9.0
 ENV PYNN_VER=0.12.4
 
 RUN $VENV/bin/pip install scipy tables pythran pandas numexpr matplotlib --upgrade 
+RUN $VENV/bin/pip install "cython<3.1.0"
 
 #### Install NEST