Remove system installs of many py packages

Author: pgleeson

base/Dockerfile

@@ -9,11 +9,11 @@ LABEL org.opencontainers.image.description="A base Docker image for Python-based
 ENV DEBIAN_FRONTEND=noninteractive
 ENV LANG=C.UTF-8
 
-RUN apt-get update; apt-get install -y automake libtool build-essential openmpi-bin libopenmpi-dev git vim  \
+RUN apt-get update
+RUN apt-get install -y automake libtool build-essential openmpi-bin libopenmpi-dev git vim  \
                        wget python3 libpython3-dev libncurses5-dev libreadline-dev libgsl0-dev cython3 \
-                       python3-numpy python3-scipy python3-matplotlib python3-jinja2 python3-mock \
-                       ipython3 python3-httplib2 python3-docutils python3-yaml \
-                       subversion python3-venv python3-mpi4py python3-tables python3-h5py cmake zlib1g-dev
+                       ipython3 \
+                       subversion python3-venv python3-mpi4py cmake zlib1g-dev
 
 RUN useradd -ms /bin/bash docker
 USER docker