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Merge pull request #1152 from ferchaure/spikes-in-nev-2.3
improves blackrock spikes in nev
2 parents d02ee5f + d09391c commit 17a3e8b

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+12
-4
lines changed

1 file changed

+12
-4
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neo/rawio/blackrockrawio.py

Lines changed: 12 additions & 4 deletions
Original file line numberDiff line numberDiff line change
@@ -473,6 +473,7 @@ def _parse_header(self):
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segment_mask = ev_ids == data_bl
474474
if data[segment_mask].size > 0:
475475
t = data[segment_mask][-1]["timestamp"] / self.__nev_basic_header["timestamp_resolution"]
476+
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max_nev_time = max(max_nev_time, t)
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if max_nev_time > t_stop:
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t_stop = max_nev_time
@@ -680,7 +681,8 @@ def _get_timestamp_slice(self, timestamp, seg_index, t_start, t_stop):
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if t_start is None:
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t_start = self._seg_t_starts[seg_index]
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if t_stop is None:
683-
t_stop = self._seg_t_stops[seg_index]
684+
t_stop = self._seg_t_stops[seg_index] + 1 / float(
685+
self.__nev_basic_header['timestamp_resolution'])
684686

685687
if t_start is None:
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ind_start = None
@@ -713,10 +715,16 @@ def _get_spike_raw_waveforms(self, block_index, seg_index, unit_index, t_start,
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)
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unit_spikes = all_spikes[mask]
715717

716-
wf_dtype = self.__nev_params("waveform_dtypes")[channel_id]
717-
wf_size = self.__nev_params("waveform_size")[channel_id]
718+
wf_dtype = self.__nev_params('waveform_dtypes')[channel_id]
719+
wf_size = self.__nev_params('waveform_size')[channel_id]
720+
wf_byte_size = np.dtype(wf_dtype).itemsize * wf_size
721+
722+
dt1 = [
723+
('extra', 'S{}'.format(unit_spikes['waveform'].dtype.itemsize - wf_byte_size)),
724+
('ch_waveform', 'S{}'.format(wf_byte_size))]
725+
726+
waveforms = unit_spikes['waveform'].view(dt1)['ch_waveform'].flatten().view(wf_dtype)
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719-
waveforms = unit_spikes["waveform"].flatten().view(wf_dtype)
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waveforms = waveforms.reshape(int(unit_spikes.size), 1, int(wf_size))
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timestamp = unit_spikes["timestamp"]

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