Merge branch 'master' of https://github.com/NeuralEnsemble/python-neo into extend_OE_npix

Author: alejoe91

.github/workflows/core-test.yml

@@ -0,0 +1,51 @@
+name: NeoCoreTest
+
+on:
+  pull_request:
+    branches: [master]
+    types: [synchronize, opened, reopened, ready_for_review]
+
+  # run checks on any change of master, including merge of PRs
+  push:
+    branches: [master]
+
+
+
+jobs:
+  multi-os-python-numpy:
+    runs-on: ${{ matrix.os }}
+
+    strategy:
+      fail-fast: true
+      matrix:
+        os: ["ubuntu-latest", "macos-latest", "windows-latest"]
+        python-version: ['3.7', '3.8', '3.9']
+        numpy-version: ['1.16.6', '1.19.5', '1.20.3', '1.21.5', '1.22.3']
+        exclude:
+           - python-version: '3.7'
+             numpy-version: '1.22.3'
+
+    steps:
+        - name: Set up Python ${{ matrix.python-version }}
+          uses: actions/setup-python@v2
+          with:
+            python-version: ${{ matrix.python-version }}
+
+        - name: Checkout repository
+          uses: actions/checkout@v2
+
+        - name: Install numpy ${{ matrix.numpy-version }}
+          run: |
+            python -m pip install --upgrade pip
+            pip install numpy==${{ matrix.numpy-version }}
+            pip install pytest pytest-cov
+            pip install .
+
+        - name: List pip packages
+          run: |
+            pip -V
+            pip list
+
+        - name: Run tests
+          run: |
+            pytest --cov=neo neo/test/coretest

.github/workflows/full-test.yml

@@ -1,4 +1,4 @@
-name: neo.io and neo.rawio tests
+name: NeoIoTest
 
 on:
   pull_request:
@@ -9,12 +9,13 @@ on:
   push:
     branches: [master]
 
+
 jobs:
   build-and-test:
     name: Test on (${{ matrix.os }})
     runs-on: ${{ matrix.os }}
     strategy:
-      fail-fast: false
+      fail-fast: true
       matrix:
         # "macos-latest", "windows-latest"
         os: ["ubuntu-latest", ]

.readthedocs.yaml

@@ -9,5 +9,7 @@ sphinx:
    configuration: doc/source/conf.py
 
 python:
-   install:
-   - requirements: doc/requirements_docs.txt 
+  install:
+    - method: pip
+      path: .
+    - requirements: doc/requirements_docs.txt

.travis.yml

@@ -0,0 +1,10 @@
+========================
+Neo 0.10.2 release notes
+========================
+
+8th March 2022
+
+This release fixes the following bugs introduced in 0.10.1:
+
+1. Remove broken imports in `spike2rawio.py <https://github.com/NeuralEnsemble/python-neo/issues/1089>`_
+2. Fix the compilation of the documentation on `readthedoc <https://github.com/NeuralEnsemble/python-neo/issues/1084>`_

doc/source/releases/0.10.2.rst

@@ -6,6 +6,7 @@ Release notes
 .. toctree::
    :maxdepth: 1
 
+   releases/0.10.2.rst
    releases/0.10.1.rst
    releases/0.10.0.rst
    releases/0.9.0.rst

doc/source/whatisnew.rst

@@ -120,8 +120,12 @@ def _parse_header(self):
 
                 if seg_index == 0:
                     # add in channel list
+                    if ch_name[:2].upper() == 'CH':
+                        units = 'uV'
+                    else:
+                        units = 'V'
                     signal_channels.append((ch_name, chan_id, chan_info['sampleRate'],
-                                'int16', 'V', chan_info['bitVolts'], 0., processor_id))
+                                'int16', units, chan_info['bitVolts'], 0., processor_id))
 
             # In some cases, continuous do not have the same lentgh because
             # one record block is missing when the "OE GUI is freezing"
@@ -173,7 +177,7 @@ def _parse_header(self):
 
         # and create streams channels (keep natural order 'CH' first)
         stream_ids, order = np.unique(chan_stream_ids, return_index=True)
-        stream_ids = stream_ids[order]
+        stream_ids = stream_ids[np.argsort(order)]
         signal_streams = [(f'Signals {stream_id}', f'{stream_id}') for stream_id in stream_ids]
         signal_streams = np.array(signal_streams, dtype=_signal_stream_dtype)