pep8 clean

Author: samuelgarcia

neo/test/iotest/common_io_test.py

@@ -92,7 +92,7 @@ def setUp(self):
         # these objects can be either written or read
         self.io_readorwrite = list(set(self.ioclass.readable_objects) |
                                    set(self.ioclass.writeable_objects))
-        
+
         if HAVE_DATALAD:
             for remote_path in self.entities_to_download:
                 download_dataset(repo=repo_for_test, remote_path=remote_path)
@@ -185,18 +185,6 @@ def get_local_path(self, sub_path):
         # TODO later : remove the str when all IOs handle the Path stuff
         local_path = str(local_path)
         return local_path
-    
-    def get_filename_path(self, filename):
-        # keep for backward compatibility
-        # will be removed soon
-        root_local_path = self.get_local_base_folder()
-        local_path = root_local_path / self.shortname / filename
-        # TODO later : remove the str when all IOs handle the Path stuff
-        local_path = str(local_path)
-        print('get_filename_path will be removed (use get_local_path() instead)', self.__class__.__name__, local_path)
-        return local_path
-
-
 
     def generic_io_object(self, filename=None, return_path=False, clean=False):
         '''

neo/test/iotest/test_brainwaredamio.py

@@ -83,11 +83,11 @@ class BrainwareDamIOTestCase(BaseTestIO, unittest.TestCase):
     '''
     ioclass = BrainwareDamIO
     read_and_write_is_bijective = False
-    
+
     entities_to_download = [
         'brainwaredam'
     ]
-    
+
     # These are the files it tries to read and test for compliance
     entities_to_test = [
         'brainwaredam/block_300ms_4rep_1clust_part_ch1.dam',

neo/test/iotest/test_brainwaref32io.py

@@ -89,7 +89,7 @@ class BrainwareF32IOTestCase(BaseTestIO, unittest.TestCase):
     '''
     ioclass = BrainwareF32IO
     read_and_write_is_bijective = False
-    
+
     entities_to_download = [
         'brainwaref32'
     ]

neo/test/iotest/test_brainwaresrcio.py

@@ -270,7 +270,7 @@ class BrainwareSrcIOTestCase(BaseTestIO, unittest.TestCase):
     entities_to_download = [
         'brainwaresrc'
     ]
-    
+
     # These are the files it tries to read and test for compliance
     files_to_test = FILES_TO_TEST
 
@@ -315,7 +315,7 @@ def test_against_reference(self):
             if not refname:
                 continue
             obj = self.read_file(filename=filename, readall=True)[0]
-            refobj = proc_src(self.get_filename_path(refname))
+            refobj = proc_src(self.get_local_path(refname))
             try:
                 assert_neo_object_is_compliant(obj)
                 assert_neo_object_is_compliant(refobj)

neo/test/iotest/test_nestio.py

@@ -599,10 +599,6 @@ class TestColumnIO(BaseTestIO, unittest.TestCase):
 
     def setUp(self):
         BaseTestIO.setUp(self)
-        #~ filename = get_test_file_full_path(
-            #~ ioclass=NestIO,
-            #~ filename='0gid-1time-2Vm-3gex-4gin-1260-0.dat',
-            #~ directory=self.local_test_dir, clean=False)
         filename = self.get_local_path('nest/0gid-1time-2Vm-3gex-4gin-1260-0.dat')
         self.testIO = ColumnIO(filename=filename)
 

neo/test/iotest/test_neuralynxio.py

@@ -224,7 +224,7 @@ def _load_plaindata(self, filename, numSamps):
 
     # def test_ncs(self):
         # for session in self.files_to_test:
-        #     dirname = self.get_filename_path(session)
+        #     dirname = self.get_local_path(session)
         #     nio = NeuralynxIO(dirname=dirname, use_cache=False)
         #     block = nio.read_block()
 
@@ -247,7 +247,7 @@ def _load_plaindata(self, filename, numSamps):
     @unittest.skip("nse failing for now as per issue #907")
     def test_keep_original_spike_times(self):
         for session in self.files_to_test:
-            dirname = self.get_filename_path(session)
+            dirname = self.get_local_path(session)
             nio = NeuralynxIO(dirname=dirname, keep_original_times=True)
             block = nio.read_block()
 

neo/test/iotest/test_neuroshareio.py

@@ -71,7 +71,7 @@ def setUp(self):
             raise unittest.SkipTest("Not currently supported on OS X")
 
     def test_with_multichannel(self):
-        filename0 = self.get_filename_path(self.files_to_download[0])
+        filename0 = self.get_local_path(self.files_to_download[0])
         reader = NeuroshareIO(filename0, self.dllname)
         blocks = reader.read()
         n = len(blocks[0].segments[0].analogsignals)

neo/test/iotest/test_nixio.py

@@ -744,7 +744,7 @@ def create_all_annotated(cls):
         event.annotate(**cls.rdict(4))
         seg.events.append(event)
 
-        spiketrain = SpikeTrain(times=times, t_stop=10*pq.s,
+        spiketrain = SpikeTrain(times=times, t_stop=10 * pq.s,
                         units=pq.s, array_annotations=times_ann)
         d = cls.rdict(6)
         d["quantity"] = pq.Quantity(10, "mV")

neo/test/iotest/test_nixio_fr.py

@@ -22,7 +22,7 @@
 @unittest.skipUnless(HAVE_NIX, "Requires NIX")
 class TestNixfr(BaseTestIO, unittest.TestCase, ):
     ioclass = NixIOfr
-    
+
     entities_to_download = [
         'nix/nixio_fr.nix'
     ]

neo/test/iotest/test_stimfitio.py

@@ -30,7 +30,6 @@ class TestStimfitIO(BaseTestIO, unittest.TestCase):
         'stimfit/File_stimfit_5.h5',
         'stimfit/File_stimfit_6.h5',
     ]
-    
 
 
 if __name__ == "__main__":