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Extended TestPhyIO class; removed 'seg_extra_info' in seg.annotation assertion
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neo/test/iotest/test_phyio.py

Lines changed: 6 additions & 11 deletions
Original file line numberDiff line numberDiff line change
@@ -31,15 +31,9 @@ class TestPhyIO(BaseTestIO, unittest.TestCase):
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'phy_example_0/cluster_group.tsv'
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]
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34-
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class SpecificTestPhyIO(unittest.TestCase):
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def setUp(self):
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temp_directory = Path(tempfile.gettempdir())
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self.temp_folder = temp_directory.joinpath(
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'files_for_testing_neo/phy/phy_example_0')
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def test_read_segment_lazy(self):
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r = PhyIO(dirname=self.temp_folder)
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dirname = self.get_filename_path('phy_example_0')
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r = PhyIO(dirname=dirname)
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seg = r.read_segment(lazy=True)
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for ana in seg.analogsignals:
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assert isinstance(ana, AnalogSignalProxy)
@@ -59,7 +53,6 @@ def test_read_segment_lazy(self):
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self.assertNotEqual(st.size, 0)
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# annotations
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assert 'seg_extra_info' in seg.annotations
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assert seg.name == 'Seg #0 Block #0'
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for anasig in seg.analogsignals:
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assert anasig.name is not None
@@ -71,11 +64,13 @@ def test_read_segment_lazy(self):
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assert ep.name is not None
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def test_read_block(self):
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r = PhyIO(dirname=self.temp_folder)
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dirname = self.get_filename_path('phy_example_0')
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r = PhyIO(dirname=dirname)
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bl = r.read_block(lazy=True)
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def test_read_segment_with_time_slice(self):
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r = PhyIO(dirname=self.temp_folder)
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dirname = self.get_filename_path('phy_example_0')
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r = PhyIO(dirname=dirname)
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seg = r.read_segment(time_slice=None)
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spikes_full = seg.spiketrains[0]
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