Skip to content

Commit efc8080

Browse files
Merge pull request #1237 from NDolensek/master
spikeglxrawio.py updated to support 1.0-NHP probes
2 parents 5a5748f + d4dae04 commit efc8080

File tree

1 file changed

+7
-2
lines changed

1 file changed

+7
-2
lines changed

neo/rawio/spikeglxrawio.py

Lines changed: 7 additions & 2 deletions
Original file line numberDiff line numberDiff line change
@@ -40,6 +40,11 @@
4040
imDatPrb_type=1 (NP 1.0)
4141
imDatPrb_type=21 (NP 2.0, single multiplexed shank)
4242
imDatPrb_type=24 (NP 2.0, 4-shank)
43+
imDatPrb_type=1030 (NP 1.0-NHP 45mm SOI90 - NHP long 90um wide, staggered contacts)
44+
imDatPrb_type=1031 (NP 1.0-NHP 45mm SOI125 - NHP long 125um wide, staggered contacts)
45+
imDatPrb_type=1032 (NP 1.0-NHP 45mm SOI115 / 125 linear - NHP long 125um wide, linear contacts)
46+
imDatPrb_type=1022 (NP 1.0-NHP 25mm - NHP medium)
47+
imDatPrb_type=1015 (NP 1.0-NHP 10mm - NHP short)
4348
4449
Author : Samuel Garcia
4550
Some functions are copied from Graham Findlay
@@ -380,7 +385,7 @@ def extract_stream_info(meta_file, meta):
380385
# metad['imroTbl'] contain two gain per channel AP and LF
381386
# except for the last fake channel
382387
per_channel_gain = np.ones(num_chan, dtype='float64')
383-
if 'imDatPrb_type' not in meta or meta['imDatPrb_type'] == '0':
388+
if 'imDatPrb_type' not in meta or meta['imDatPrb_type'] == '0' or meta['imDatPrb_type'] in ('1015', '1022', '1030', '1031', '1032'):
384389
# This work with NP 1.0 case with different metadata versions
385390
# https://github.com/billkarsh/SpikeGLX/blob/gh-pages/Support/Metadata_3A.md#imec
386391
# https://github.com/billkarsh/SpikeGLX/blob/gh-pages/Support/Metadata_3B1.md#imec
@@ -404,7 +409,7 @@ def extract_stream_info(meta_file, meta):
404409
channel_gains = gain_factor * per_channel_gain * 1e6
405410
else:
406411
raise NotImplementedError('This meta file version of spikeglx'
407-
'is not implemented')
412+
' is not implemented')
408413
else:
409414
stream_kind = ''
410415
stream_name = device

0 commit comments

Comments
 (0)