feat: make package py3.12+

We use generics features from 3.12

Author: sanjayankur31

.github/workflows/ci.yml

@@ -22,7 +22,7 @@ jobs:
     runs-on: ubuntu-latest
     strategy:
       matrix:
-        python-version: ["3.11", "3.12", "3.13"]
+        python-version: ["3.12", "3.13"]
       fail-fast: false
 
     steps:

AGENTS.md

@@ -140,7 +140,7 @@ from neuroml_mcp.utils import register_all_tools
 - Primary configuration in `setup.cfg`
 - Build configuration in `pyproject.toml`
 - Use semantic versioning (currently 0.0.1)
-- Support Python 3.9-3.13
+- Support Python 3.12-3.13
 
 ### Environment Variables
 - Use environment variables for configurable values
@@ -213,7 +213,7 @@ from neuroml_mcp.utils import register_all_tools
 ```python
 def my_tool_function(context: Context, param1: str, param2: int) -> Dict[str, Any]:
     """Tool description with comprehensive docstring.
-    
+
     :param context: MCP context for the operation
     :param param1: Description of first parameter
     :param param2: Description of second parameter
@@ -231,4 +231,4 @@ async with sandbox_manager.get_sandbox() as sandbox:
         raise RuntimeError(f"Command failed: {result.stderr}")
 ```
 
-This file should be updated as the project evolves. All agents should familiarize themselves with these guidelines before making changes to the codebase.
+This file should be updated as the project evolves. All agents should familiarize themselves with these guidelines before making changes to the codebase.

code_ai_pkg/setup.cfg

@@ -12,9 +12,6 @@ classifiers=
     Intended Audience :: Science/Research
     Natural Language :: English
     Operating System :: OS Independent
-    Programming Language :: Python :: 3.9
-    Programming Language :: Python :: 3.10
-    Programming Language :: Python :: 3.11
     Programming Language :: Python :: 3.12
     Programming Language :: Python :: 3.13
     Topic :: Scientific/Engineering

mcp_pkg/setup.cfg

@@ -12,9 +12,6 @@ classifiers=
     Intended Audience :: Science/Research
     Natural Language :: English
     Operating System :: OS Independent
-    Programming Language :: Python :: 3.9
-    Programming Language :: Python :: 3.10
-    Programming Language :: Python :: 3.11
     Programming Language :: Python :: 3.12
     Programming Language :: Python :: 3.13
     Topic :: Scientific/Engineering

neuroml_ai/setup.cfg

@@ -12,9 +12,6 @@ classifiers=
     Intended Audience :: Science/Research
     Natural Language :: English
     Operating System :: OS Independent
-    Programming Language :: Python :: 3.9
-    Programming Language :: Python :: 3.10
-    Programming Language :: Python :: 3.11
     Programming Language :: Python :: 3.12
     Programming Language :: Python :: 3.13
     Topic :: Scientific/Engineering

rag_pkg/setup.cfg

@@ -12,9 +12,6 @@ classifiers=
     Intended Audience :: Science/Research
     Natural Language :: English
     Operating System :: OS Independent
-    Programming Language :: Python :: 3.9
-    Programming Language :: Python :: 3.10
-    Programming Language :: Python :: 3.11
     Programming Language :: Python :: 3.12
     Programming Language :: Python :: 3.13
     Topic :: Scientific/Engineering

utils_pkg/setup.cfg

@@ -12,9 +12,6 @@ classifiers=
     Intended Audience :: Science/Research
     Natural Language :: English
     Operating System :: OS Independent
-    Programming Language :: Python :: 3.9
-    Programming Language :: Python :: 3.10
-    Programming Language :: Python :: 3.11
     Programming Language :: Python :: 3.12
     Programming Language :: Python :: 3.13
     Topic :: Scientific/Engineering