diff --git a/content/working-groups/_index.md b/content/working-groups/_index.md
index be5edab..d778ef0 100644
--- a/content/working-groups/_index.md
+++ b/content/working-groups/_index.md
@@ -17,8 +17,9 @@ sections:
NWB standard to integrate and leverage these resources for storing
relevant metadata on the genotypes and genetic backgrounds of individual
mice, linking neurophysiological data to the databases and literature that
- characterize the experimental animals.
[NDX
- Proposal]
+ characterize the experimental animals.
+
+ [NDX Proposal]
image: /images/genotype.png
- title: Spatial coordinates representation
content: Reporting of spatial coordinates within the brain is a complex problem,
@@ -31,7 +32,9 @@ sections:
stimuli) within a spatial coordinate system. This type of standardization
will facilitate the programmatic integration and comparison of data
represented in NWB with other datasets that have been mapped to the same
- coordinate system.
[NDX Proposal]
+ coordinate system.
+
+ [NDX Proposal]
image: /images/spatial.png
- title: Behavioral task representation
content: Behavioral tasks are an increasingly important component in
@@ -45,22 +48,10 @@ sections:
building a standard markup language (BEADL) to build state machine
descriptions of task logic and control flow within a trial and across
trials in a session, including tools for visualization, construction, and
- emulation of tasks from these machine-readable descriptions.
[NDX Proposal]
+ emulation of tasks from these machine-readable descriptions.
+
+ [NDX Proposal]
image: /images/behavioral.png
- - title: Spatial coordinates representation
- content: Reporting of spatial coordinates within the brain is a complex problem,
- requiring registration between data collected with multiple recording
- modalities (imaging, probes) and across brain preparations (in vivo whole
- brain, slice) with common reference atlases and controlled vocabularies.
- The focus of this working group is to create an NWB extension to capture
- spatial coordinate systems, spatial mappings between two systems, and the
- representation of objects (e.g. cells, probes, injections, and optogenetic
- stimuli) within a spatial coordinate system. This type of standardization
- will facilitate the programmatic integration and comparison of data
- represented in NWB with other datasets that have been mapped to the same
- coordinate system.
[NDX Proposal]
- image: /images/spatial.png
- title: External Working Groups
bg_white: true
content: NWB team members also participate in numerous external working groups.
@@ -68,7 +59,6 @@ sections:
NWB, they all involve components that are relevant to NWB and commonly
use NWB or are creating a Neurodata Extension (NDX) as part of their
charge.
- image: /images/external-group.png
- title: INCF Working Group on standardization of a directory structure containing
neurophysiology data
bg_white: true
@@ -81,9 +71,9 @@ sections:
facilitate obtaining reproducible research and data sharing following the
FAIR principles. In addition to data structures, the working group will
discuss what experimental metadata is essential, and which formats and
- structures are appropriate for different metadata types.
Working Groups Page
- image: /images/incf-group.png
+ structures are appropriate for different metadata types.
+ Working Group Page
+ image: /images/incf-wg-genaral-image.jpg
- title: INCF Electrophysiology Stimulation Ontology Working Group
bg_white: true
content: Stimulus protocols are an essential component of neurophysiological
@@ -100,8 +90,10 @@ sections:
protocols use very similar protocols with waveforms that have stereotyped
profiles (e.g., long steps, ramps, chirps). This working group will also
draft recommendations for representation in NWB of parameterized stimuli
- beyond 1-D waveforms.
Working Groups Page
- image: /images/incf-ontology-group.png
+ beyond 1-D waveforms.
+
+ Working Group Page
+ image: /images/incf-wg-genaral-image.jpg
- title: Standardization of data/file formats for simulation outputs in
computational neuroscience
bg_white: true
@@ -115,7 +107,8 @@ sections:
data. Tasks for this working group include compiling a list of existing
formats, defining evaluation criteria and evaluating the different
formats, and identifying avenues for improving interoperability.
- Source, NDX
+ Source,
+ NDX
image: /images/simulation.png
past_groups:
enable: true
@@ -136,13 +129,23 @@ past_groups:
title: Outcomes
content: The working group drafted an extension for the NWB schema that
implements these tables for testing and evaluation of the proposed changes
- (see “Source” “NDX” “NDX
- Proposal” “YouTube”). The proposed extension underwent
+ (see Source,
+ NDX,
+
+ NDX Proposal, YouTube
+ ). The proposed extension underwent
community review and has been merged with NWB after completion of the
review. The new structures developed by this working group have been
- released as part of NWB Schema version 2.4 and
+ released as part of
+
+ NWB Schema version 2.4 and
corresponding PyNWB 2.0 and MatNWB 2.4.0.0. These new features are
- documented in the Intracellular electrophysiology tutorial
- as part o PyNWB and AlignedDynamicTable tutorial and AlignedDynmaicTable schema as part of HDMF.
+ documented in the
+
+ Intracellular electrophysiology tutorial
+ as part of PyNWB and the
+
+ AlignedDynamicTable tutorial and
+ AlignedDynmaicTable
+ schema as part of HDMF.
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