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[pre-commit.ci] auto fixes from pre-commit.com hooks
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+14
-5
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+14
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nwbinspector/nwbinspector.py

Lines changed: 14 additions & 5 deletions
Original file line numberDiff line numberDiff line change
@@ -154,7 +154,10 @@ def configure_checks(
154154
@click.argument("path")
155155
@click.option("--modules", help="Modules to import prior to reading the file(s).")
156156
@click.option(
157-
"--report-file-path", default=None, help="Save path for the report file.", type=click.Path(writable=True),
157+
"--report-file-path",
158+
default=None,
159+
help="Save path for the report file.",
160+
type=click.Path(writable=True),
158161
)
159162
@click.option("--overwrite", help="Overwrite an existing report file at the location.", is_flag=True)
160163
@click.option("--levels", help="Comma-separated names of InspectorMessage attributes to organize by.")
@@ -459,7 +462,9 @@ def inspect_nwb(
459462
filterwarnings(action="ignore", message="No cached namespaces found in .*")
460463
filterwarnings(action="ignore", message="Ignoring cached namespace .*")
461464

462-
def _collect_all_messages(nwbfile_path: FilePathType, checks: list, driver: Optional[str] = None, skip_validate: bool = False):
465+
def _collect_all_messages(
466+
nwbfile_path: FilePathType, checks: list, driver: Optional[str] = None, skip_validate: bool = False
467+
):
463468
with pynwb.NWBHDF5IO(path=nwbfile_path, mode="r", load_namespaces=True, driver=driver) as io:
464469
if not skip_validate:
465470
validation_errors = pynwb.validate(io=io)
@@ -488,16 +493,20 @@ def _collect_all_messages(nwbfile_path: FilePathType, checks: list, driver: Opti
488493
)
489494

490495
if driver != "ros3":
491-
yield _collect_all_messages(nwbfile_path=nwbfile_path, checks=checks, driver=driver, skip_validate=skip_validate)
496+
yield _collect_all_messages(
497+
nwbfile_path=nwbfile_path, checks=checks, driver=driver, skip_validate=skip_validate
498+
)
492499
else:
493500
retries = 0
494501

495502
while retries < max_retries:
496503
try:
497504
retries += 1
498-
yield _collect_all_messages(nwbfile_path=nwbfile_path, checks=checks, driver=driver, skip_validate=skip_validate)
505+
yield _collect_all_messages(
506+
nwbfile_path=nwbfile_path, checks=checks, driver=driver, skip_validate=skip_validate
507+
)
499508
except OSError: # Cannot curl request
500-
sleep(0.1 * 2 ** retries)
509+
sleep(0.1 * 2**retries)
501510

502511

503512
def run_checks(nwbfile: pynwb.NWBFile, checks: list):

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