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zStupanŽiga Stupan
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Migrate to uv (#745)
* migrate to uv * update CI/CD workflows * update .gitignore * update docs * fix main workflow * update conda config * update conda config * fix conda config * fix conda config * fix loa lint errors * fix docs config * refactor LOA * update dependencies * fix LOA * reformat loa.py --------- Co-authored-by: Žiga Stupan <ziga.stupan2@um.si>
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.github/workflows/main.yml

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jobs:
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tests:
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name: ${{ matrix.os }} / ${{ matrix.python-version }}
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runs-on: ${{ matrix.image }}
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runs-on: ${{ matrix.os }}
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strategy:
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matrix:
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os: [Ubuntu, macOS, Windows]
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python-version: ["3.10", "3.11", "3.12", "3.13", "3.14"]
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include:
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- os: Ubuntu
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image: ubuntu-22.04
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- os: Windows
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image: windows-2022
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- os: macOS
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image: macos-14
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os: [ubuntu-latest, windows-latest, macos-latest]
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python-version: ["3.11", "3.12", "3.13", "3.14"]
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fail-fast: false
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defaults:
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run:
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shell: bash
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steps:
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- uses: actions/checkout@v4
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- uses: actions/checkout@v6
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- name: Set up Python ${{ matrix.python-version }}
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uses: actions/setup-python@v5
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uses: astral-sh/setup-uv@v7
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with:
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python-version: ${{ matrix.python-version }}
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- name: Get full Python version
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id: full-python-version
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run: echo version=$(python -c "import sys; print('-'.join(str(v) for v in sys.version_info))") >> $GITHUB_OUTPUT
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- name: Bootstrap poetry
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run: |
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curl -sSL https://install.python-poetry.org | python - -y
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- name: Update PATH
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if: ${{ matrix.os != 'Windows' }}
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run: echo "$HOME/.local/bin" >> $GITHUB_PATH
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- name: Update Path for Windows
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if: ${{ matrix.os == 'Windows' }}
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run: echo "$APPDATA\Python\Scripts" >> $GITHUB_PATH
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- name: Enable long paths for git on Windows
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if: ${{ matrix.os == 'Windows' }}
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# Enable handling long path names (+260 char) on the Windows platform
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# https://docs.microsoft.com/en-us/windows/win32/fileio/naming-a-file#maximum-path-length-limitation
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run: git config --system core.longpaths true
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- name: Configure poetry
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run: poetry config virtualenvs.in-project true
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- name: Set up cache
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uses: actions/cache@v4
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id: cache
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with:
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path: .venv
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key: venv-${{ runner.os }}-${{ steps.full-python-version.outputs.version }}-${{ hashFiles('**/poetry.lock') }}
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- name: Ensure cache is healthy
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if: steps.cache.outputs.cache-hit == 'true'
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run: |
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# `timeout` is not available on macOS, so we define a custom function.
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[ "$(command -v timeout)" ] || function timeout() { perl -e 'alarm shift; exec @ARGV' "$@"; }
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# Using `timeout` is a safeguard against the Poetry command hanging for some reason.
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timeout 10s poetry run pip --version || rm -rf .venv
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- name: Check lock file
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run: poetry check --lock
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enable-cache: true
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- name: Install dependencies
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run: poetry install
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run: uv sync --locked
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- name: Run tests
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run: poetry run pytest -v
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run: uv run pytest -v

.github/workflows/publish_pypi.yml

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permissions:
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# IMPORTANT: this permission is mandatory for trusted publishing
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id-token: write
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contents: read
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steps:
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- name: Checkout code
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uses: actions/checkout@v4
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uses: actions/checkout@v6
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- name: Set up Python 3.10
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uses: actions/setup-python@v5
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- name: Set up Python 3.13
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uses: astral-sh/setup-uv@v7
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with:
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python-version: "3.10"
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- name: Install Poetry
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run: |
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curl -sSL https://install.python-poetry.org | python - -y
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- name: Update PATH
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run: echo "$HOME/.local/bin" >> $GITHUB_PATH
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python-version: "3.13"
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- name: Build project for distribution
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run: poetry build
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run: uv build
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- name: Publish package distributions to PyPI
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uses: pypa/gh-action-pypi-publish@release/v1
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run: uv publish

.github/workflows/test_conda.yml

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CONDA_PKGS_DIRS: /tmp/conda-pkgs
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runs-on: ubuntu-latest
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steps:
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- uses: actions/checkout@v4
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- uses: actions/checkout@v6
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- name: Setup Miniconda
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uses: conda-incubator/setup-miniconda@v3

.gitignore

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# Temporary Python files
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*.pyc
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*.egg-info
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__pycache__
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# Byte-compiled / optimized / DLL files
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__pycache__/
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*.py[codz]
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*$py.class
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# C extensions
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*.so
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# Distribution / packaging
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.Python
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build/
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develop-eggs/
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dist/
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downloads/
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eggs/
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.eggs/
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lib/
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lib64/
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parts/
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sdist/
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var/
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wheels/
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share/python-wheels/
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*.egg-info/
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.installed.cfg
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*.egg
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MANIFEST
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# PyInstaller
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# Usually these files are written by a python script from a template
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# before PyInstaller builds the exe, so as to inject date/other infos into it.
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*.manifest
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*.spec
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# Installer logs
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pip-log.txt
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pip-delete-this-directory.txt
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# Unit test / coverage reports
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htmlcov/
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.tox/
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.nox/
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.coverage
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.coverage.*
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.cache
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nosetests.xml
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coverage.xml
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*.cover
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*.py.cover
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.hypothesis/
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.pytest_cache/
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cover/
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# Translations
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*.mo
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*.pot
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# Django stuff:
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*.log
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local_settings.py
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db.sqlite3
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db.sqlite3-journal
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# Flask stuff:
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instance/
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.webassets-cache
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# Scrapy stuff:
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.scrapy
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# Sphinx documentation
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docs/_build/
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# PyBuilder
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.pybuilder/
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target/
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# Jupyter Notebook
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.ipynb_checkpoints
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Pipfile.lock
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# Temporary OS files
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Icon*
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.DS_Store
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# IPython
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profile_default/
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ipython_config.py
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# Temporary virtual environment files
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/.cache/
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/.pytest_cache/
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/.venv/
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# pyenv
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# For a library or package, you might want to ignore these files since the code is
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# intended to run in multiple environments; otherwise, check them in:
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# .python-version
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# Temporary server files
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.env
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# pipenv
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# According to pypa/pipenv#598, it is recommended to include Pipfile.lock in version control.
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# However, in case of collaboration, if having platform-specific dependencies or dependencies
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# having no cross-platform support, pipenv may install dependencies that don't work, or not
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# install all needed dependencies.
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# Pipfile.lock
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# UV
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# Similar to Pipfile.lock, it is generally recommended to include uv.lock in version control.
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# This is especially recommended for binary packages to ensure reproducibility, and is more
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# commonly ignored for libraries.
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# uv.lock
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# poetry
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# Similar to Pipfile.lock, it is generally recommended to include poetry.lock in version control.
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# This is especially recommended for binary packages to ensure reproducibility, and is more
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# commonly ignored for libraries.
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# https://python-poetry.org/docs/basic-usage/#commit-your-poetrylock-file-to-version-control
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# poetry.lock
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# poetry.toml
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# pdm
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# Similar to Pipfile.lock, it is generally recommended to include pdm.lock in version control.
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# pdm recommends including project-wide configuration in pdm.toml, but excluding .pdm-python.
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# https://pdm-project.org/en/latest/usage/project/#working-with-version-control
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# pdm.lock
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# pdm.toml
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.pdm-python
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.pdm-build/
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# pixi
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# Similar to Pipfile.lock, it is generally recommended to include pixi.lock in version control.
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# pixi.lock
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# Pixi creates a virtual environment in the .pixi directory, just like venv module creates one
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# in the .venv directory. It is recommended not to include this directory in version control.
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.pixi
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# PEP 582; used by e.g. github.com/David-OConnor/pyflow and github.com/pdm-project/pdm
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__pypackages__/
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# Celery stuff
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celerybeat-schedule
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celerybeat.pid
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# Redis
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*.rdb
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*.aof
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*.pid
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# Generated documentation
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/docs/gen/
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/docs/build/
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/docs/apidocs/
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/site/
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/*.html
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/*.rst
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/docs/*.png
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# Google Drive
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*.gdoc
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*.gsheet
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*.gslides
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*.gdraw
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# Testing and coverage results
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/.pytest/
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/.coverage
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/.coverage.*
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/htmlcov/
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/xmlreport/
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/pyunit.xml
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/tmp/
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*.tmp
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config/testmondata/
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.testmondata
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# Build and release directories
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/build/
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/dist/
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*.spec
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# RabbitMQ
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mnesia/
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rabbitmq/
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rabbitmq-data/
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# Sublime Text
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*.sublime-workspace
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# ActiveMQ
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activemq-data/
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# Eclipse
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.settings
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# SageMath parsed files
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*.sage.py
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# VSCODE
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.vscode/
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# Environments
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.env
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.envrc
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.venv
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env/
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venv/
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ENV/
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env.bak/
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venv.bak/
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# Spyder project settings
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.spyderproject
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.spyproject
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# Rope project settings
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.ropeproject
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# mkdocs documentation
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/site
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# mypy
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.mypy_cache/
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.dmypy.json
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dmypy.json
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# Pyre type checker
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.pyre/
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# JETBRAINS
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# pytype static type analyzer
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.pytype/
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# Cython debug symbols
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cython_debug/
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# PyCharm
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# JetBrains specific template is maintained in a separate JetBrains.gitignore that can
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# be found at https://github.com/github/gitignore/blob/main/Global/JetBrains.gitignore
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# and can be added to the global gitignore or merged into this file. For a more nuclear
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# option (not recommended) you can uncomment the following to ignore the entire idea folder.
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.idea/
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# Abstra
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# Abstra is an AI-powered process automation framework.
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# Ignore directories containing user credentials, local state, and settings.
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# Learn more at https://abstra.io/docs
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.abstra/
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# Visual Studio Code
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# Visual Studio Code specific template is maintained in a separate VisualStudioCode.gitignore
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# that can be found at https://github.com/github/gitignore/blob/main/Global/VisualStudioCode.gitignore
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# and can be added to the global gitignore or merged into this file. However, if you prefer,
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# you could uncomment the following to ignore the entire vscode folder
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.vscode/
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# Ruff stuff:
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.ruff_cache/
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# PyPI configuration file
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.pypirc
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# Marimo
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marimo/_static/
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marimo/_lsp/
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__marimo__/
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# Streamlit
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.streamlit/secrets.toml
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# Project related
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**/export
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