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python312Pacakges.fenics-dolfinx: init at 0.9.0.post1 (#404613)
2 parents d53a0ca + 2bbc507 commit 31fe2eb

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‎pkgs/by-name/ad/adios2/package.nix‎

Lines changed: 1 addition & 1 deletion
Original file line numberDiff line numberDiff line change
@@ -71,7 +71,7 @@ stdenv.mkDerivation (finalAttrs: {
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bzip2
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lz4
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c-blosc2
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hdf5-mpi
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(hdf5-mpi.override { inherit mpi; })
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libfabric
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libpng
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libsodium

‎pkgs/by-name/do/dolfinx/package.nix‎

Lines changed: 114 additions & 0 deletions
Original file line numberDiff line numberDiff line change
@@ -0,0 +1,114 @@
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{
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lib,
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stdenv,
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fetchFromGitHub,
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cmake,
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pkg-config,
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spdlog,
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pugixml,
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boost,
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petsc,
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slepc,
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kahip,
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adios2,
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python3Packages,
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catch2_3,
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withParmetis ? false,
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}:
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let
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dolfinxPackages = petsc.petscPackages.overrideScope (
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final: prev: {
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slepc = final.callPackage slepc.override { };
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adios2 = final.callPackage adios2.override { };
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kahip = final.callPackage kahip.override { };
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}
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);
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in
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stdenv.mkDerivation (finalAttrs: {
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version = "0.9.0.post1";
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pname = "dolfinx";
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src = fetchFromGitHub {
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owner = "fenics";
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repo = "dolfinx";
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tag = "v${finalAttrs.version}";
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hash = "sha256-4IIx7vUZeDwOGVdyC2PBvfhVjrmGZeVQKAwgDYScbY0=";
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};
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preConfigure = ''
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cd cpp
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'';
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nativeBuildInputs = [
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cmake
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pkg-config
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];
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buildInputs = [
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dolfinxPackages.kahip
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dolfinxPackages.scotch
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] ++ lib.optional withParmetis dolfinxPackages.parmetis;
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propagatedBuildInputs = [
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spdlog
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pugixml
55+
boost
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petsc
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dolfinxPackages.hdf5
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dolfinxPackages.slepc
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dolfinxPackages.adios2
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python3Packages.fenics-basix
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python3Packages.fenics-ffcx
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];
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cmakeFlags = [
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(lib.cmakeBool "DOLFINX_ENABLE_ADIOS2" true)
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(lib.cmakeBool "DOLFINX_ENABLE_PETSC" true)
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(lib.cmakeBool "DOLFIN_ENABLE_PARMETIS" withParmetis)
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(lib.cmakeBool "DOLFINX_ENABLE_SCOTCH" true)
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(lib.cmakeBool "DOLFINX_ENABLE_SLEPC" true)
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(lib.cmakeBool "DOLFINX_ENABLE_KAHIP" true)
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(lib.cmakeFeature "CMAKE_INSTALL_BINDIR" "bin")
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(lib.cmakeFeature "CMAKE_INSTALL_LIBDIR" "lib")
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(lib.cmakeFeature "CMAKE_INSTALL_INCLUDEDIR" "include")
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];
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passthru.tests = {
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unittests = stdenv.mkDerivation {
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pname = "${finalAttrs.pname}-unittests";
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inherit (finalAttrs) version src;
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preConfigure = ''
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cd cpp/test
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'';
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nativeBuildInputs = [
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cmake
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pkg-config
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];
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buildInputs = [ finalAttrs.finalPackage ];
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nativeCheckInputs = [ catch2_3 ];
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doCheck = true;
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installPhase = ''
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touch $out
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'';
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};
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};
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meta = {
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homepage = "https://fenicsproject.org";
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downloadPage = "https://github.com/fenics/dolfinx";
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description = "Computational environment of FEniCSx and implements the FEniCS Problem Solving Environment in C++ and Python";
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changelog = "https://github.com/fenics/dolfinx/releases/tag/${finalAttrs.src.tag}";
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license = with lib.licenses; [
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bsd2
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lgpl3Plus
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];
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platforms = lib.platforms.unix;
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maintainers = with lib.maintainers; [ qbisi ];
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};
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})

‎pkgs/by-name/pe/petsc/package.nix‎

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Original file line numberDiff line numberDiff line change
@@ -78,6 +78,8 @@ let
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petscPackages = lib.makeScope newScope (self: {
7979
inherit
8080
mpi
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python3
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python3Packages
8183
# global override options
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mpiSupport
8385
fortranSupport

‎pkgs/development/python-modules/fenics-basix/default.nix‎

Lines changed: 81 additions & 0 deletions
Original file line numberDiff line numberDiff line change
@@ -0,0 +1,81 @@
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{
2+
lib,
3+
buildPythonPackage,
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fetchFromGitHub,
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scikit-build-core,
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nanobind,
7+
cmake,
8+
ninja,
9+
pkg-config,
10+
blas,
11+
lapack,
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numpy,
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sympy,
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scipy,
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matplotlib,
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fenics-ufl,
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pytest-xdist,
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pytestCheckHook,
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}:
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buildPythonPackage rec {
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pname = "fenics-basix";
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version = "0.9.0";
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pyproject = true;
25+
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src = fetchFromGitHub {
27+
owner = "fenics";
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repo = "basix";
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tag = "v${version}";
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hash = "sha256-jLQMDt6zdl+oixd5Qevn4bvxBsXpTNcbH2Os6TC9sRQ=";
31+
};
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dontUseCmakeConfigure = true;
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build-system = [
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scikit-build-core
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nanobind
38+
];
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nativeBuildInputs = [
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cmake
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ninja
43+
pkg-config
44+
];
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dependencies = [
47+
numpy
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];
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buildInputs = [
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blas
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lapack
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];
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# Prefer finding BLAS and LAPACK via pkg-config.
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# Avoid using the Accelerate.framework from the Darwin SDK.
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# Also, avoid mistaking BLAS for LAPACK.
58+
env.CMAKE_ARGS = lib.cmakeBool "BLA_PREFER_PKGCONFIG" true;
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pythonImportsCheck = [
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"basix"
62+
];
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64+
nativeCheckInputs = [
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sympy
66+
scipy
67+
matplotlib
68+
fenics-ufl
69+
pytest-xdist
70+
pytestCheckHook
71+
];
72+
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meta = {
74+
homepage = "https://fenicsproject.org";
75+
downloadPage = "https://github.com/fenics/basix";
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description = "Finite element definition and tabulation runtime library";
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changelog = "https://github.com/fenics/basix/releases/tag/${src.tag}";
78+
license = lib.licenses.mit;
79+
maintainers = with lib.maintainers; [ qbisi ];
80+
};
81+
}

‎pkgs/development/python-modules/fenics-dolfinx/default.nix‎

Lines changed: 157 additions & 0 deletions
Original file line numberDiff line numberDiff line change
@@ -0,0 +1,157 @@
1+
{
2+
lib,
3+
stdenv,
4+
toPythonModule,
5+
fetchFromGitHub,
6+
buildPythonPackage,
7+
8+
# build-system
9+
scikit-build-core,
10+
nanobind,
11+
12+
# nativeBuildInputs
13+
cmake,
14+
ninja,
15+
pkg-config,
16+
17+
# buildInputs
18+
dolfinx,
19+
20+
# dependency
21+
numpy,
22+
cffi,
23+
mpi4py,
24+
petsc4py,
25+
slepc4py,
26+
adios2,
27+
kahip,
28+
fenics-ffcx,
29+
fenics-basix,
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fenics-ufl,
31+
32+
# nativeCheckInputs
33+
scipy,
34+
matplotlib,
35+
pytest-xdist,
36+
pytestCheckHook,
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writableTmpDirAsHomeHook,
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mpiCheckPhaseHook,
39+
40+
# custom options
41+
withParmetis ? false,
42+
43+
# passthru.tests
44+
fenics-dolfinx,
45+
mpich,
46+
}:
47+
48+
let
49+
fenicsPackages = petsc4py.petscPackages.overrideScope (
50+
final: prev: {
51+
slepc = final.callPackage slepc4py.override { };
52+
adios2 = final.callPackage adios2.override { };
53+
kahip = final.callPackage kahip.override { };
54+
dolfinx = final.callPackage dolfinx.override { inherit withParmetis; };
55+
}
56+
);
57+
in
58+
buildPythonPackage rec {
59+
inherit (dolfinx)
60+
version
61+
src
62+
;
63+
pname = "fenics-dolfinx";
64+
pyproject = true;
65+
66+
pythonRelaxDeps = [
67+
"cffi"
68+
"fenics-ufl"
69+
];
70+
71+
preConfigure = ''
72+
cd python
73+
'';
74+
75+
dontUseCmakeConfigure = true;
76+
77+
build-system = [
78+
scikit-build-core
79+
nanobind
80+
];
81+
82+
nativeBuildInputs = [
83+
cmake
84+
ninja
85+
pkg-config
86+
fenicsPackages.mpi
87+
];
88+
89+
buildInputs = [
90+
fenicsPackages.dolfinx
91+
];
92+
93+
dependencies = [
94+
numpy
95+
cffi
96+
fenics-basix
97+
fenics-ffcx
98+
fenics-ufl
99+
petsc4py
100+
fenicsPackages.slepc
101+
fenicsPackages.adios2
102+
fenicsPackages.kahip
103+
(mpi4py.override { inherit (fenicsPackages) mpi; })
104+
];
105+
106+
doCheck = true;
107+
108+
nativeCheckInputs = [
109+
scipy
110+
matplotlib
111+
pytest-xdist
112+
pytestCheckHook
113+
writableTmpDirAsHomeHook
114+
mpiCheckPhaseHook
115+
];
116+
117+
preCheck = ''
118+
rm -rf dolfinx
119+
'';
120+
121+
pythonImportsCheck = [
122+
"dolfinx"
123+
];
124+
125+
disabledTests = [
126+
# require cffi<1.17
127+
"test_cffi_expression"
128+
"test_hexahedron_mesh"
129+
];
130+
131+
passthru = {
132+
tests =
133+
{
134+
complex = fenics-dolfinx.override {
135+
petsc4py = petsc4py.override { scalarType = "complex"; };
136+
};
137+
}
138+
// lib.optionalAttrs stdenv.hostPlatform.isLinux {
139+
mpich = fenics-dolfinx.override {
140+
petsc4py = petsc4py.override { mpi = mpich; };
141+
};
142+
};
143+
};
144+
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meta = {
146+
homepage = "https://fenicsproject.org";
147+
downloadPage = "https://github.com/fenics/dolfinx";
148+
description = "Computational environment of FEniCSx and implements the FEniCS Problem Solving Environment in C++ and Python";
149+
changelog = "https://github.com/fenics/dolfinx/releases/tag/${src.tag}";
150+
license = with lib.licenses; [
151+
bsd2
152+
lgpl3Plus
153+
];
154+
platforms = lib.platforms.unix;
155+
maintainers = with lib.maintainers; [ qbisi ];
156+
};
157+
}

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