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hkaspersenhkaspersen
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Merge pull request #123 from NorwegianVeterinaryInstitute/version_updates
Version updates
2 parents 123a2ab + b46a813 commit a07a8d8

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9 files changed

+28
-28
lines changed

9 files changed

+28
-28
lines changed

‎modules/BAKTA.nf‎

Lines changed: 2 additions & 2 deletions
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@@ -1,6 +1,6 @@
11
process BAKTA {
2-
conda (params.enable_conda ? 'bioconda::bakta=1.9.1' : null)
3-
container 'evezeyl/bakta:1.9.1'
2+
conda (params.enable_conda ? 'bioconda::bakta=1.10.4' : null)
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container 'evezeyl/bakta:1.10.4'
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label 'process_medium_memory'
66

‎modules/CHEWBBACA.nf‎

Lines changed: 8 additions & 8 deletions
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@@ -1,6 +1,6 @@
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process CHEWBBACA_DOWNLOAD_SCHEMA {
2-
conda (params.enable_conda ? 'bioconda::chewbbaca=3.3.1' : null)
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container 'quay.io/biocontainers/chewbbaca:3.3.1--pyhdfd78af_0'
2+
conda (params.enable_conda ? 'bioconda::chewbbaca=3.3.10' : null)
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container 'quay.io/biocontainers/chewbbaca:3.3.10--pyhdfd78af_0'
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label 'process_local'
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@@ -20,8 +20,8 @@ process CHEWBBACA_DOWNLOAD_SCHEMA {
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}
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process CHEWBBACA_PREP_SCHEMA {
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conda (params.enable_conda ? 'bioconda::chewbbaca=3.3.1' : null)
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container 'quay.io/biocontainers/chewbbaca:3.3.1--pyhdfd78af_0'
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conda (params.enable_conda ? 'bioconda::chewbbaca=3.3.10' : null)
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container 'quay.io/biocontainers/chewbbaca:3.3.10--pyhdfd78af_0'
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input:
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path(schema)
@@ -46,8 +46,8 @@ process CHEWBBACA_PREP_SCHEMA {
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}
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process CHEWBBACA_EVAL_SCHEMA {
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conda (params.enable_conda ? 'bioconda::chewbbaca=3.3.1' : null)
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container 'quay.io/biocontainers/chewbbaca:3.3.1--pyhdfd78af_0'
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conda (params.enable_conda ? 'bioconda::chewbbaca=3.3.10' : null)
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container 'quay.io/biocontainers/chewbbaca:3.3.10--pyhdfd78af_0'
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input:
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path(schema)
@@ -64,8 +64,8 @@ process CHEWBBACA_EVAL_SCHEMA {
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}
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process CHEWBBACA_ALLELECALL {
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conda (params.enable_conda ? 'bioconda::chewbbaca=3.3.1' : null)
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container 'quay.io/biocontainers/chewbbaca:3.3.1--pyhdfd78af_0'
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conda (params.enable_conda ? 'bioconda::chewbbaca=3.3.10' : null)
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container 'quay.io/biocontainers/chewbbaca:3.3.10--pyhdfd78af_0'
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label 'process_high_memory_cpu_time'
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‎modules/FASTANI.nf‎

Lines changed: 4 additions & 4 deletions
Original file line numberDiff line numberDiff line change
@@ -1,6 +1,6 @@
11
process FASTANI {
2-
conda (params.enable_conda ? 'bioconda::fastani=1.33' : null)
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container 'quay.io/biocontainers/fastani:1.33--h0fdf51a_1'
2+
conda (params.enable_conda ? 'bioconda::fastani=1.34' : null)
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container 'quay.io/biocontainers/fastani:1.34--hb66fcc3_5'
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label 'process_high_cpu_time'
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@@ -25,8 +25,8 @@ process FASTANI {
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}
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process FASTANI_VERSION {
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conda (params.enable_conda ? 'bioconda::fastani=1.33' : null)
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container 'quay.io/biocontainers/fastani:1.33--h0fdf51a_1'
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conda (params.enable_conda ? 'bioconda::fastani=1.34' : null)
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container 'quay.io/biocontainers/fastani:1.34--hb66fcc3_5'
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script:
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"""

‎modules/GUBBINS.nf‎

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Original file line numberDiff line numberDiff line change
@@ -1,6 +1,6 @@
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process GUBBINS {
2-
conda (params.enable_conda ? 'bioconda::gubbins=3.3.4' : null)
3-
container 'quay.io/biocontainers/gubbins:3.3.4--py310pl5321he4a0461_0'
2+
conda (params.enable_conda ? 'bioconda::gubbins=3.4' : null)
3+
container 'quay.io/biocontainers/gubbins:3.4--py39pl5321h577a1d6_1'
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label 'process_high_memory_time'
66

‎modules/IQTREE.nf‎

Lines changed: 2 additions & 2 deletions
Original file line numberDiff line numberDiff line change
@@ -1,6 +1,6 @@
11
process IQTREE {
2-
conda (params.enable_conda ? 'bioconda::iqtree=2.2.6' : null)
3-
container 'quay.io/biocontainers/iqtree:2.2.6--h21ec9f0_0'
2+
conda (params.enable_conda ? 'bioconda::iqtree=2.4.0' : null)
3+
container 'quay.io/biocontainers/iqtree:2.4.0--h503566f_0'
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label 'process_long'
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‎modules/MLST.nf‎

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@@ -1,6 +1,6 @@
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process MLST {
2-
conda (params.enable_conda ? 'bioconda::mlst=2.19.0' : null)
3-
container 'quay.io/biocontainers/mlst:2.19.0--hdfd78af_1'
2+
conda (params.enable_conda ? 'bioconda::mlst=2.23.0' : null)
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container 'quay.io/biocontainers/mlst:2.23.0--hdfd78af_0'
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label 'process_high_cpu_time'
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‎modules/PANAROO.nf‎

Lines changed: 4 additions & 4 deletions
Original file line numberDiff line numberDiff line change
@@ -1,6 +1,6 @@
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process PANAROO_QC {
2-
conda (params.enable_conda ? 'bioconda::panaroo=1.3.4' : null)
3-
container 'quay.io/biocontainers/panaroo:1.3.4--pyhdfd78af_0'
2+
conda (params.enable_conda ? 'bioconda::panaroo=1.5.1' : null)
3+
container 'quay.io/biocontainers/panaroo:1.5.1--pyhdfd78af_0'
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label 'process_high_memory_time'
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@@ -22,8 +22,8 @@ process PANAROO_QC {
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}
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process PANAROO_PANGENOME {
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conda (params.enable_conda ? 'bioconda::panaroo=1.3.4' : null)
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container 'quay.io/biocontainers/panaroo:1.3.4--pyhdfd78af_0'
25+
conda (params.enable_conda ? 'bioconda::panaroo=1.5.1' : null)
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container 'quay.io/biocontainers/panaroo:1.5.1--pyhdfd78af_0'
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label 'process_high_cpu_time'
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‎modules/PARSNP.nf‎

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Original file line numberDiff line numberDiff line change
@@ -1,6 +1,6 @@
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process PARSNP {
2-
conda (params.enable_conda ? 'bioconda::parsnp=2.0.3' : null)
3-
container 'quay.io/biocontainers/parsnp:2.0.3--hdcf5f25_0'
2+
conda (params.enable_conda ? 'bioconda::parsnp=2.1.3' : null)
3+
container 'quay.io/biocontainers/parsnp:2.1.3--h077b44d_0'
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label 'process_long'
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‎modules/SEQKIT.nf‎

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Original file line numberDiff line numberDiff line change
@@ -1,6 +1,6 @@
11
process DEDUPLICATE {
2-
conda (params.enable_conda ? 'bioconda::seqkit=2.1.0' : null)
3-
container 'quay.io/biocontainers/seqkit:2.1.0--h9ee0642_0'
2+
conda (params.enable_conda ? 'bioconda::seqkit=2.9:0' : null)
3+
container 'quay.io/biocontainers/seqkit:2.9.0--h9ee0642_0'
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input:
66
file(fasta)

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