scripting-and-programming-languages.md

Scripting and languages

UNIX shell

• Carpentries | The Unix Shell | GitHub

• Carpentries | Introduction to the Command Line for Genomics | GitHub

• SIB | | Unix Tutorial | GitHub

• bioinformaticsworkbook.org Introduction to Unix

  Video available

Python

• Carpentries | Programming with Python | GitHub

• SIB | First Steps with Python in Life Sciences

  Jupyter Notebook

• Harvard Chan Bioinformatics Core | Introduction to Python | GitHub

  Jupyter Notebook

• The Carpentries Incubator Interactive Data Visualizations in Python | GitHub

R

• N8CIR — Reproducible Analyses in R

  Videos available: RStudio, tidyverse, ggplot

• Carpentries | R for Reproducible Scientific Analysis | GitHub

  Including an introduction to RStudio

• SIB | First Steps with R in Life Sciences

  Slides, codes and datasets provided

• Harvard Chan Bioinformatics Core | Introduction to R | GitHub

  RStudio

• Harvard Chan Bioinformatics Core | Introduction to R - Practical workshop | GitHub

  RStudio

• N8CIR — R for Text Analysis

  Videos available