chore: Add new R version (#50) #186
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| --- | |
| name: test-coverage | |
| on: | |
| push: | |
| branches: | |
| - main | |
| - master | |
| pull_request: | |
| branches: | |
| - main | |
| - master | |
| workflow_dispatch: | |
| workflow_call: | |
| inputs: | |
| use_codecov: | |
| description: Upload code coverage results to codecov.io | |
| required: false | |
| type: boolean | |
| default: false | |
| use_local_setup_action: | |
| description: Use composite .github/actions/setup/action.yaml to setup package specific needs | |
| required: false | |
| type: boolean | |
| default: false | |
| generate_token: | |
| description: Generate token from GitHub app | |
| required: false | |
| type: boolean | |
| default: false | |
| secrets: | |
| TOKEN_APP_ID: | |
| description: ID of the GitHub app used to generate a new token | |
| required: false | |
| TOKEN_APP_PRIVATE_KEY: | |
| description: Private Key for the GitHub app used to generate a new token | |
| required: false | |
| permissions: | |
| contents: read | |
| pull-requests: write | |
| jobs: | |
| test-coverage: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: Generate custom token | |
| id: generate-token | |
| if: ${{ inputs.generate_token }} | |
| uses: actions/create-github-app-token@v2 | |
| with: | |
| app-id: ${{ secrets.TOKEN_APP_ID }} | |
| private-key: ${{ secrets.TOKEN_APP_PRIVATE_KEY }} | |
| owner: ${{ github.repository_owner }} | |
| - name: Package specific setup | |
| if: ${{ inputs.use_local_setup_action }} | |
| uses: ./.github/actions/setup | |
| - uses: r-lib/actions/setup-r@v2 | |
| with: | |
| use-public-rspm: true | |
| - uses: r-lib/actions/setup-r-dependencies@v2 | |
| env: | |
| GITHUB_PAT: ${{ steps.generate-token.outputs.token || secrets.GITHUB_TOKEN }} | |
| with: | |
| extra-packages: | | |
| any::covr | |
| any::xml2 | |
| any::dplyr | |
| any::knitr | |
| needs: coverage | |
| - name: Test coverage | |
| run: | | |
| covr::package_coverage() |> | |
| covr::to_cobertura(filename = "cobertura.xml") | |
| xml <- xml2::read_xml("cobertura.xml") | |
| pkg_cov <- xml |> | |
| xml2::xml_find_first("packages/package") |> | |
| xml2::xml_attrs() |> | |
| dplyr::bind_rows() | |
| fnc_cov <- xml |> | |
| xml2::xml_find_first("packages/package") |> | |
| xml2::xml_find_all("classes/class") |> | |
| xml2::xml_attrs() |> | |
| lapply(dplyr::bind_rows) | |
| res <- list(pkg_cov, fnc_cov) |> | |
| dplyr::bind_rows() |> | |
| dplyr::transmute( | |
| Name = dplyr::coalesce(filename, name), | |
| `Coverage (%)` = round(as.numeric(`line-rate`)*100, digits = 2) | |
| ) |> | |
| knitr::kable() | |
| c("# Code coverage", res) |> | |
| writeLines(con = "coverage.md") | |
| shell: 'Rscript {0}' | |
| - name: Add Coverage PR Comment | |
| uses: marocchino/sticky-pull-request-comment@v2 | |
| if: github.event_name == 'pull_request' | |
| with: | |
| recreate: true | |
| header: coverage | |
| path: coverage.md | |
| - name: Upload coverage reports to Codecov | |
| if: ${{ inputs.use_codecov }} | |
| uses: codecov/codecov-action@v5 | |
| with: | |
| fail_ci_if_error: true | |
| files: "./cobertura.xml" | |
| token: ${{ secrets.CODECOV_TOKEN }} | |
| slug: ${{ github.repository }} | |
| verbose: true |