r.workflows/.github/workflows/check_nn_versions.yaml at main · NovoNordisk-OpenSource/r.workflows · GitHub

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---
name: R-CMD-check NN versions
on:
  push:
    branches:
      - main
      - master
  pull_request:
    branches:
      - main
      - master
  workflow_dispatch:
  workflow_call:
    inputs:
      use_local_setup_action:
        description: Use composite .github/actions/setup/action.yaml to setup package specific needs
        required: false
        type: boolean
        default: false
      error-on:
        description: 'What type of result should cause a build error?'
        required: false
        type: string
        default: '"warning"'
      generate_token:
        description: Generate token from GitHub app
        required: false
        type: boolean
        default: false
      min_lock_date:
        description: Minimum lock date to use for historic checks
        required: false
        type: string
        default: '2000-01-01'
    secrets:
      TOKEN_APP_ID:
        description: ID of the GitHub app used to generate a new token
        required: false
      TOKEN_APP_PRIVATE_KEY:
        description: Private Key for the GitHub app used to generate a new token
        required: false
permissions:
  contents: read
jobs:
  filter-nn-versions:
    runs-on: macos-latest
    outputs:
      config: ${{ steps.filter.outputs.config }}
    env:
      MIN_LOCK_DATE: ${{ inputs.min_lock_date || '2000-01-01' }}
    steps:
      - name: NN lock dates and R versions
        run: |
          cat > config.json <<EOF
          [
              {"date":"2023-10-25","r":"4.3.1"},
              {"date":"2024-08-06","r":"4.4.1"},
              {"date":"2025-12-05","r":"4.5.2"}
          ]
          EOF
      - name: Filter lock dates
        id: filter
        run: |
          echo "config=$(jq --arg date $MIN_LOCK_DATE --compact-output '[.[] | select(.date >= $date)]' config.json)" >> "$GITHUB_OUTPUT"
  R-CMD-check:
    needs: filter-nn-versions
    runs-on: '${{ matrix.os }}'
    name: '${{ matrix.os }} (R ${{ matrix.config.r }}, ${{ matrix.config.date }})'
    strategy:
      fail-fast: false
      matrix:
        os:
          - macos-latest
          - windows-latest
          - ubuntu-latest
        config: ${{ fromJSON(needs.filter-nn-versions.outputs.config) }}
    env:
      R_KEEP_PKG_SOURCE: 'yes'
      ERROR_ON_DEFAULT: '"warning"'
    steps:
      - uses: actions/checkout@v4
      - name: Generate custom token
        id: generate-token
        if:  ${{ inputs.generate_token }}
        uses: actions/create-github-app-token@v2
        with:
          app-id: ${{ secrets.TOKEN_APP_ID }}
          private-key: ${{ secrets.TOKEN_APP_PRIVATE_KEY }}
          owner: ${{ github.repository_owner }}
      - name: Package specific setup
        if: ${{ inputs.use_local_setup_action }}
        uses: ./.github/actions/setup
      - uses: r-lib/actions/setup-pandoc@v2
      - uses: r-lib/actions/setup-r@v2
        with:
          r-version: '${{ matrix.config.r }}'
          use-public-rspm: false
          cran: 'https://packagemanager.posit.co/cran/${{matrix.config.date}}'
          extra-repositories: 'https://novonordisk-opensource.r-universe.dev'
      - uses: r-lib/actions/setup-r-dependencies@v2
        env:
          GITHUB_PAT: ${{ steps.generate-token.outputs.token || secrets.GITHUB_TOKEN }}
        with:
          extra-packages: any::rcmdcheck, local::.
          needs: check
      - uses: r-lib/actions/check-r-package@v2
        with:
          upload-snapshots: true
          error-on: '${{ inputs.error-on || env.ERROR_ON_DEFAULT }}'