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‎_config.yml‎

Lines changed: 70 additions & 41 deletions
Original file line numberDiff line numberDiff line change
@@ -2585,6 +2585,41 @@ ontologies:
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repository: https://github.com/adeans/gallont
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title: Plant Gall Ontology
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tracker: https://github.com/adeans/gallont/issues
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- activity_status: active
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build:
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method: archive
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path: archive
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source_url: http://build.berkeleybop.org/job/build-gaz/lastSuccessfulBuild/artifact/*zip*/archive.zip
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contact:
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email: [email protected]
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github: lschriml
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label: Lynn Schriml
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orcid: 0000-0001-8910-9851
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description: A gazetteer constructed on ontological principles. The countries are
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actively maintained.
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domain: environment
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homepage: http://environmentontology.github.io/gaz/
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id: gaz
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layout: ontology_detail
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license:
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label: CC0 1.0
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logo: http://mirrors.creativecommons.org/presskit/buttons/80x15/png/cc-zero.png
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url: https://creativecommons.org/publicdomain/zero/1.0/
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mailing_list: https://groups.google.com/forum/#!forum/obo-gazetteer
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ontology_purl: http://purl.obolibrary.org/obo/gaz.owl
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preferredPrefix: GAZ
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products:
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- id: gaz.owl
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ontology_purl: http://purl.obolibrary.org/obo/gaz.owl
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- id: gaz.obo
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ontology_purl: http://purl.obolibrary.org/obo/gaz.obo
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- description: A country specific subset of the GAZ.
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id: gaz/gaz-countries.owl
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ontology_purl: http://purl.obolibrary.org/obo/gaz/gaz-countries.owl
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title: GAZ countries
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repository: https://github.com/EnvironmentOntology/gaz
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title: Gazetteer
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tracker: https://github.com/EnvironmentOntology/gaz/issues
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- activity_status: active
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contact:
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email: [email protected]
@@ -5178,8 +5213,11 @@ ontologies:
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- label: BioPortal
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title: BioPortal Browser
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url: https://bioportal.bioontology.org/ontologies/ONTONEO
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- label: OntoBee
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title: OntoBee Browser
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url: https://ontobee.org/ontology/ONTONEO
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build:
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source_url: http://purl.obolibrary.org/obo/ontoneo/ontoneo.owl
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source_url: https://raw.githubusercontent.com/ontoneo-project/Ontoneo/master/ontoneo.owl
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contact:
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email: [email protected]
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github: FernandaFarinelli
@@ -5189,24 +5227,49 @@ ontologies:
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to provide a representation of the data from electronic health records (EHRs)
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involved in the care of the pregnant woman, and of her baby.
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domain: health
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homepage: ontoneo.com
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homepage: https://ontoneo.com/
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id: ontoneo
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layout: ontology_detail
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license:
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label: CC BY 3.0
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label: CC BY 4.0
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logo: http://mirrors.creativecommons.org/presskit/buttons/80x15/png/by.png
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url: http://creativecommons.org/licenses/by/3.0/
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url: https://creativecommons.org/licenses/by/4.0/
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mailing_list: http://groups.google.com/group/ontoneo-discuss
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ontology_purl: http://purl.obolibrary.org/obo/ontoneo.owl
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preferredPrefix: ONTONEO
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products:
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- id: ontoneo.owl
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- description: The full version of ONTONEO in OWL format
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id: ontoneo.owl
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ontology_purl: http://purl.obolibrary.org/obo/ontoneo.owl
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title: ONTONEO
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publications:
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- id: https://doi.org/10.5281/zenodo.17429771
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title: 'OntONeo: The Obstetric and Neonatal Ontology'
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- id: https://doi.org/10.5281/zenodo.17508651
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title: Formal Ontologies in Knowledge Organization within the Obstetric and Neonatal
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Domain
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repository: https://github.com/ontoneo-project/Ontoneo
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tags:
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- biomedical
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title: Obstetric and Neonatal Ontology
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tracker: https://github.com/ontoneo-project/Ontoneo/issues
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usages:
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- description: The ReCOL research group uses OntONeo to model and structure biomedical
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information, particularly in obstetrics and neonatology.
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examples:
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- description: The ontology has been applied in studies on data interoperability
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and semantic integration, improving access to structured medical information
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and enabling knowledge sharing between systems.
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url: https://mba.eci.ufmg.br/wp-content/uploads/Anais_CBIS_2018_FarinelliAlmeidaLouize.pdf
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user: http://recol.eci.ufmg.br/
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- description: OntONeo serves as a knowledge representation framework to support
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clinical decision-making and data interoperability in healthcare. It is used
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in information retrieval applications, enabling structured queries over medical
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databases and facilitating access to critical obstetric and neonatal health
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information.
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examples:
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- description: Demonstrates OntONeo’s application for enabling structured data
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access and semantic reasoning in clinical contexts.
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url: https://doi.org/10.56238/devopinterscie-267
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user: http://hdl.handle.net/1843/38044
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- activity_status: active
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contact:
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email: [email protected]
@@ -8590,40 +8653,6 @@ ontologies:
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label: Homo sapiens
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title: Foundational Model of Anatomy Ontology (subset)
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tracker: https://bitbucket.org/uwsig/fma/issues
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- activity_status: inactive
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build:
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method: archive
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path: archive
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source_url: http://build.berkeleybop.org/job/build-gaz/lastSuccessfulBuild/artifact/*zip*/archive.zip
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contact:
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email: [email protected]
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github: lschriml
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label: Lynn Schriml
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orcid: 0000-0001-8910-9851
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description: A gazetteer constructed on ontological principles. The countries are
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actively maintained.
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domain: environment
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homepage: http://environmentontology.github.io/gaz/
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id: gaz
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layout: ontology_detail
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license:
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label: CC0 1.0
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logo: http://mirrors.creativecommons.org/presskit/buttons/80x15/png/cc-zero.png
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url: https://creativecommons.org/publicdomain/zero/1.0/
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mailing_list: https://groups.google.com/forum/#!forum/obo-gazetteer
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ontology_purl: http://purl.obolibrary.org/obo/gaz.owl
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products:
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- id: gaz.owl
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ontology_purl: http://purl.obolibrary.org/obo/gaz.owl
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- id: gaz.obo
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ontology_purl: http://purl.obolibrary.org/obo/gaz.obo
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- description: A country specific subset of the GAZ.
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id: gaz/gaz-countries.owl
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ontology_purl: http://purl.obolibrary.org/obo/gaz/gaz-countries.owl
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title: GAZ countries
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repository: https://github.com/EnvironmentOntology/gaz
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title: Gazetteer
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tracker: https://github.com/EnvironmentOntology/gaz/issues
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- activity_status: inactive
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contact:
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email: [email protected]

‎registry/obo_prefixes.ttl‎

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Original file line numberDiff line numberDiff line change
@@ -62,6 +62,7 @@
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,[ sh:prefix "FOVT" ; sh:namespace "http://purl.obolibrary.org/obo/FOVT_"]
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,[ sh:prefix "FYPO" ; sh:namespace "http://purl.obolibrary.org/obo/FYPO_"]
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,[ sh:prefix "GALLONT" ; sh:namespace "http://purl.obolibrary.org/obo/GALLONT_"]
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,[ sh:prefix "GAZ" ; sh:namespace "http://purl.obolibrary.org/obo/GAZ_"]
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,[ sh:prefix "GECKO" ; sh:namespace "http://purl.obolibrary.org/obo/GECKO_"]
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,[ sh:prefix "GENEPIO" ; sh:namespace "http://purl.obolibrary.org/obo/GENEPIO_"]
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,[ sh:prefix "GENO" ; sh:namespace "http://purl.obolibrary.org/obo/GENO_"]
@@ -203,7 +204,6 @@
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,[ sh:prefix "CEPH" ; sh:namespace "http://purl.obolibrary.org/obo/CEPH_"]
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,[ sh:prefix "EHDAA2" ; sh:namespace "http://purl.obolibrary.org/obo/EHDAA2_"]
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,[ sh:prefix "FMA" ; sh:namespace "http://purl.obolibrary.org/obo/FMA_"]
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,[ sh:prefix "GAZ" ; sh:namespace "http://purl.obolibrary.org/obo/GAZ_"]
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,[ sh:prefix "IDOMAL" ; sh:namespace "http://purl.obolibrary.org/obo/IDOMAL_"]
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,[ sh:prefix "MIRO" ; sh:namespace "http://purl.obolibrary.org/obo/MIRO_"]
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,[ sh:prefix "RNAO" ; sh:namespace "http://purl.obolibrary.org/obo/RNAO_"]

‎registry/ontologies.jsonld‎

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Original file line numberDiff line numberDiff line change
@@ -3642,6 +3642,52 @@
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"title": "Plant Gall Ontology",
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"tracker": "https://github.com/adeans/gallont/issues"
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},
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{
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"activity_status": "active",
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"build": {
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"method": "archive",
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"path": "archive",
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"source_url": "http://build.berkeleybop.org/job/build-gaz/lastSuccessfulBuild/artifact/*zip*/archive.zip"
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},
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"contact": {
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"email": "[email protected]",
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"github": "lschriml",
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"label": "Lynn Schriml",
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"orcid": "0000-0001-8910-9851"
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},
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"description": "A gazetteer constructed on ontological principles. The countries are actively maintained.",
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"domain": "environment",
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"homepage": "http://environmentontology.github.io/gaz/",
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"id": "gaz",
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"layout": "ontology_detail",
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"license": {
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"label": "CC0 1.0",
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"logo": "http://mirrors.creativecommons.org/presskit/buttons/80x15/png/cc-zero.png",
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"url": "https://creativecommons.org/publicdomain/zero/1.0/"
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},
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"mailing_list": "https://groups.google.com/forum/#!forum/obo-gazetteer",
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"ontology_purl": "http://purl.obolibrary.org/obo/gaz.owl",
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"preferredPrefix": "GAZ",
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"products": [
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{
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"id": "gaz.owl",
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"ontology_purl": "http://purl.obolibrary.org/obo/gaz.owl"
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},
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{
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"id": "gaz.obo",
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"ontology_purl": "http://purl.obolibrary.org/obo/gaz.obo"
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},
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{
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"description": "A country specific subset of the GAZ.",
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"id": "gaz/gaz-countries.owl",
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"ontology_purl": "http://purl.obolibrary.org/obo/gaz/gaz-countries.owl",
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"title": "GAZ countries"
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}
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],
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"repository": "https://github.com/EnvironmentOntology/gaz",
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"title": "Gazetteer",
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"tracker": "https://github.com/EnvironmentOntology/gaz/issues"
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},
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{
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"activity_status": "active",
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"contact": {
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"label": "BioPortal",
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"title": "BioPortal Browser",
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"url": "https://bioportal.bioontology.org/ontologies/ONTONEO"
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},
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{
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"label": "OntoBee",
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"title": "OntoBee Browser",
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"url": "https://ontobee.org/ontology/ONTONEO"
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}
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],
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"build": {
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"source_url": "http://purl.obolibrary.org/obo/ontoneo/ontoneo.owl"
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"source_url": "https://raw.githubusercontent.com/ontoneo-project/Ontoneo/master/ontoneo.owl"
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},
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"contact": {
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"email": "[email protected]",
@@ -7212,29 +7263,60 @@
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},
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"description": "The Obstetric and Neonatal Ontology is a structured controlled vocabulary to provide a representation of the data from electronic health records (EHRs) involved in the care of the pregnant woman, and of her baby.",
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"domain": "health",
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"homepage": "ontoneo.com",
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"homepage": "https://ontoneo.com/",
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"id": "ontoneo",
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"layout": "ontology_detail",
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"license": {
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"label": "CC BY 3.0",
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"label": "CC BY 4.0",
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"logo": "http://mirrors.creativecommons.org/presskit/buttons/80x15/png/by.png",
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"url": "http://creativecommons.org/licenses/by/3.0/"
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"url": "https://creativecommons.org/licenses/by/4.0/"
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},
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"mailing_list": "http://groups.google.com/group/ontoneo-discuss",
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"ontology_purl": "http://purl.obolibrary.org/obo/ontoneo.owl",
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"preferredPrefix": "ONTONEO",
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"products": [
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{
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"description": "The full version of ONTONEO in OWL format",
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"id": "ontoneo.owl",
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"ontology_purl": "http://purl.obolibrary.org/obo/ontoneo.owl"
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"ontology_purl": "http://purl.obolibrary.org/obo/ontoneo.owl",
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"title": "ONTONEO"
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}
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],
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"repository": "https://github.com/ontoneo-project/Ontoneo",
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"tags": [
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"biomedical"
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"publications": [
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{
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"id": "https://doi.org/10.5281/zenodo.17429771",
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"title": "OntONeo: The Obstetric and Neonatal Ontology"
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},
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{
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"id": "https://doi.org/10.5281/zenodo.17508651",
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"title": "Formal Ontologies in Knowledge Organization within the Obstetric and Neonatal Domain"
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}
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],
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"repository": "https://github.com/ontoneo-project/Ontoneo",
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"title": "Obstetric and Neonatal Ontology",
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"tracker": "https://github.com/ontoneo-project/Ontoneo/issues"
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"tracker": "https://github.com/ontoneo-project/Ontoneo/issues",
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"usages": [
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{
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"description": "The ReCOL research group uses OntONeo to model and structure biomedical information, particularly in obstetrics and neonatology.",
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"examples": [
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{
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"description": "The ontology has been applied in studies on data interoperability and semantic integration, improving access to structured medical information and enabling knowledge sharing between systems.",
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"url": "https://mba.eci.ufmg.br/wp-content/uploads/Anais_CBIS_2018_FarinelliAlmeidaLouize.pdf"
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}
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],
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"user": "http://recol.eci.ufmg.br/"
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},
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{
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"description": "OntONeo serves as a knowledge representation framework to support clinical decision-making and data interoperability in healthcare. It is used in information retrieval applications, enabling structured queries over medical databases and facilitating access to critical obstetric and neonatal health information.",
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"examples": [
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{
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"description": "Demonstrates OntONeo’s application for enabling structured data access and semantic reasoning in clinical contexts.",
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"url": "https://doi.org/10.56238/devopinterscie-267"
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}
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],
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"user": "http://hdl.handle.net/1843/38044"
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}
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]
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},
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{
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"activity_status": "active",
@@ -12022,51 +12104,6 @@
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"title": "Foundational Model of Anatomy Ontology (subset)",
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"tracker": "https://bitbucket.org/uwsig/fma/issues"
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},
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{
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"activity_status": "inactive",
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"build": {
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"method": "archive",
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"path": "archive",
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"source_url": "http://build.berkeleybop.org/job/build-gaz/lastSuccessfulBuild/artifact/*zip*/archive.zip"
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},
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"contact": {
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"email": "[email protected]",
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"github": "lschriml",
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"label": "Lynn Schriml",
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"orcid": "0000-0001-8910-9851"
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},
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"description": "A gazetteer constructed on ontological principles. The countries are actively maintained.",
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"domain": "environment",
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"homepage": "http://environmentontology.github.io/gaz/",
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"id": "gaz",
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"layout": "ontology_detail",
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"license": {
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"label": "CC0 1.0",
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"logo": "http://mirrors.creativecommons.org/presskit/buttons/80x15/png/cc-zero.png",
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"url": "https://creativecommons.org/publicdomain/zero/1.0/"
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},
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"mailing_list": "https://groups.google.com/forum/#!forum/obo-gazetteer",
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"ontology_purl": "http://purl.obolibrary.org/obo/gaz.owl",
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"products": [
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{
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"id": "gaz.owl",
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"ontology_purl": "http://purl.obolibrary.org/obo/gaz.owl"
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},
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{
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"id": "gaz.obo",
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"ontology_purl": "http://purl.obolibrary.org/obo/gaz.obo"
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},
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{
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"description": "A country specific subset of the GAZ.",
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"id": "gaz/gaz-countries.owl",
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"ontology_purl": "http://purl.obolibrary.org/obo/gaz/gaz-countries.owl",
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"title": "GAZ countries"
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}
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],
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"repository": "https://github.com/EnvironmentOntology/gaz",
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"title": "Gazetteer",
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"tracker": "https://github.com/EnvironmentOntology/gaz/issues"
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},
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{
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"activity_status": "inactive",
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"contact": {

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