Make CI work in forks #258
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| name: Run Unit Test via Pytest | |
| on: | |
| pull_request: | |
| branches: [ "**" ] | |
| push: | |
| branches: [ "**" ] | |
| tags: '*' | |
| permissions: | |
| # needed to allow actions to create and delete old caches | |
| actions: write | |
| contents: read | |
| # pull-requests: write # not needed for the moment but may be useful to create bots that comment the PR | |
| # env: | |
| # data_encrypt: ${{ secrets.data_encrypt }} | |
| jobs: | |
| build: | |
| runs-on: ${{ matrix.os }} | |
| strategy: | |
| matrix: | |
| python-version: ["3.11"] | |
| os: | |
| - ubuntu-latest | |
| - macos-latest | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: Install OpenMP in MacOS | |
| if: matrix.os == 'macos-latest' | |
| run: | |
| brew install libomp | |
| shell: bash | |
| - name: Set up Python ${{ matrix.python-version }} | |
| uses: actions/setup-python@v4 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| #---------------------------------------------- | |
| # load cached venv if cache exists | |
| #---------------------------------------------- | |
| - name: Load cached venv | |
| id: cached-poetry-dependencies | |
| uses: actions/cache@v4 | |
| with: | |
| path: .venv | |
| key: venv-${{ runner.os }}-${{ steps.setup-python.outputs.python-version }}-${{ hashFiles('**/poetry.lock') }} | |
| - name: Install Poetry | |
| uses: snok/install-poetry@v1 | |
| with: | |
| virtualenvs-create: true | |
| virtualenvs-in-project: true | |
| #---------------------------------------------- | |
| # install dependencies if cache does not exist | |
| #---------------------------------------------- | |
| - name: Install dependencies | |
| if: steps.cached-poetry-dependencies.outputs.cache-hit != 'true' | |
| run: poetry install --no-interaction --no-root | |
| #---------------------------------------------- | |
| # install your root project, if required | |
| #---------------------------------------------- | |
| - name: Install library | |
| run: poetry install --no-interaction | |
| #---------------------------------------------- | |
| # add matrix specifics and run test suite | |
| #---------------------------------------------- | |
| - name: Download preprocessed data | |
| run: | | |
| rm -rf dataDownload | |
| mkdir -p dataDownload/ | |
| fileId=1SUMYw1jfQClnfv_gP0izBD8MsHNc8V5P | |
| pip install gdown | |
| gdown https://drive.google.com/uc?id=$fileId -O dataDownload/data.tar.gz | |
| tar -xzf dataDownload/data.tar.gz -C dataDownload/ | |
| # run: | | |
| # rm -rf dataDownload | |
| # mkdir -p dataDownload/ | |
| # fileId=1SUMYw1jfQClnfv_gP0izBD8MsHNc8V5P | |
| # pip install gdown | |
| # gdown https://drive.google.com/uc?id=$fileId -O dataDownload/data.tar.gz.gpg | |
| # gpg -d --pinentry-mode=loopback --passphrase "$data_encrypt" dataDownload/data.tar.gz.gpg > dataDownload/data.tar.gz | |
| # tar -xzf dataDownload/data.tar.gz -C dataDownload/ | |
| - name: Run tests | |
| run: | | |
| source .venv/bin/activate | |
| python -m pytest --cov --cov-report xml | |
| - name: Upload coverage reports to Codecov | |
| uses: codecov/codecov-action@v5 | |
| env: | |
| CODECOV_TOKEN: ${{ secrets.CODECOV_TOKEN }} |