change

Author: xingzhongyu

dance/datasets/singlemodality.py

@@ -467,7 +467,7 @@ def download(self):
             "mouse_embryo_data": "GSE65525.zip?dl=0",
             "mouse_brain_data": "neuron_10k.zip?dl=0",
             "human_stemcell_data": "GSE75748.zip?dl=0",
-            "human_breast_TGFb_data": "GSE114397.zip?dl=0",
+            "human_breast_TGFb_data": "GSE114397.zip?rlkey=dleuq5tn66e4lxu2uzvjkq3w0",
             "human_breast_Dox_data": "GSM3141014.zip?dl=0",
             "human_melanoma_data": "human_melanoma_data.zip?dl=0",
             "mouse_visual_data": "mouse_visual_data.zip?dl=0"
@@ -493,6 +493,7 @@ def download(self):
             if not any(map(osp.exists, glob(osp.join(self.data_dir, "train", class_name, dl_files[class_name])))):
                 os.system("mkdir " + self.data_dir + "/train/" + class_name)
                 os.system("wget " + self.URL[class_name])  # assumes linux... mac needs to install
+                logger.info(self.URL[class_name])
                 os.system("unzip " + file_name[class_name])
                 os.system("rm " + file_name[class_name])
                 os.system("mv " + dl_files[class_name] + " " + self.data_dir + "/train/" + class_name + "/")

dance/metadata/scdeepsort.csv

@@ -71,7 +71,6 @@ human,Blood,5608,train,,,train_human_Blood84230ea4-998d-4aa8-8456-81dd54ce23af_d
 human,Blood,4232,train,,,train_human_Blood8a554710-08bc-4005-87cd-da9675bdc2e7_data.h5ad,https://www.dropbox.com/scl/fi/3msp96ja6jfh5xlmw7a9x/human_Blood8a554710-08bc-4005-87cd-da9675bdc2e7_data.h5ad?rlkey=jpwwi9qs67zsnx1zu854an8q3&st=6c2xelpk&dl=1
 human,Blood,7142,train,,,train_human_Bloodd3566d6a-a455-4a15-980f-45eb29114cab_data.h5ad,https://www.dropbox.com/scl/fi/rkihpmulg6mxg0a1o223b/human_Bloodd3566d6a-a455-4a15-980f-45eb29114cab_data.h5ad?rlkey=ez8p7a99a265u1g997m4e0xje&st=eenwcwfp&dl=1
 human,Blood,9337,train,,,train_human_Bloodeeacb0c1-2217-4cf6-b8ce-1f0fedf1b569_data.h5ad,https://www.dropbox.com/scl/fi/s9scv6cscspqifttksy6i/human_Bloodeeacb0c1-2217-4cf6-b8ce-1f0fedf1b569_data.h5ad?rlkey=yuyu1u2qhm21y9on5i4b8o9rq&st=g19couz6&dl=1
-human,Heart,2834,train,,,train_human_Heart5a11f879-d1ef-458a-910c-9b0bdfca5ebf_data.h5ad,https://www.dropbox.com/scl/fi/xfs40azio1v07rs7f6uuy/human_Heart5a11f879-d1ef-458a-910c-9b0bdfca5ebf_data.h5ad?rlkey=1qnbtnlb0n9p38csc8un6voef&st=4oqen4p6&dl=1
 human,Blood,10000,train,,,train_human_Blood01209dce-3575-4bed-b1df-129f57fbc031_data.h5ad,https://www.dropbox.com/scl/fi/wqfbtld761iu33xydjih1/human_Blood01209dce-3575-4bed-b1df-129f57fbc031_data.h5ad?rlkey=6fpf8eu9lm6orczc4lzlhu22f&st=joo51ad1&dl=1
 human,Blood,10000,train,,,train_human_Blood055ca631-6ffb-40de-815e-b931e10718c0_data.h5ad,https://www.dropbox.com/scl/fi/d60o68h6gr42di9x1ogv7/human_Blood055ca631-6ffb-40de-815e-b931e10718c0_data.h5ad?rlkey=hpofxqr2gdue3avafqa09fyw7&st=ykswto0h&dl=1
 human,Blood,10000,train,,,train_human_Blood2a498ace-872a-4935-984b-1afa70fd9886_data.h5ad,https://www.dropbox.com/scl/fi/krlqfjj15wrw8qvz5ra0s/human_Blood2a498ace-872a-4935-984b-1afa70fd9886_data.h5ad?rlkey=4jxlruy78g3hp9yr608pmvs9s&st=org7vf5t&dl=1